View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21140_high_2 (Length: 495)
Name: NF21140_high_2
Description: NF21140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21140_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 55848392 - 55848655
Alignment:
| Q |
1 |
aaaaaatatatctattcttccttttcttcttcctctgcttgcatgatattaaccgcaatgtccattgtatctaaagtcattctcagcaactcattccgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
55848392 |
aaaaaatatatctattcttccttttcttcttcctctgcttgcatgatattaaccgcaatgtccattgtatctaaagtctttctcagcaactcattccgaa |
55848491 |
T |
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| Q |
101 |
caagcacagcttccagctggaagtnnnnnnnnnnnnnctaaccatttaattcaaatttattcaaaaacataatactaaatatagaggatggtatcattaa |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
55848492 |
caagcacagcttccagctggaagtaaaaagaaaaaaactaaccatttaattcaaatttattcaaaaacataatactaaatatagatgatggtatcattaa |
55848591 |
T |
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| Q |
201 |
cattaccatattgttttttccattatcgagcaacatcatgcaatctctcgagcttccttccatc |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55848592 |
cattaccatattgttttttccattatcgagcaacatcatgcaatctctcgagcttccttccatc |
55848655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 55784210 - 55784473
Alignment:
| Q |
1 |
aaaaaatatatctattcttccttttcttcttcctctgcttgcatgatattaaccgcaatgtccattgtatctaaagtcattctcagcaactcattccgaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
55784210 |
aaaaaatatatctattcttccttttcttcttcctctgcttgcatgatattaaccgcaatgtccgttgtatctaaagtctttctcagcaactcattccgaa |
55784309 |
T |
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| Q |
101 |
caagcacagcttccagctggaagtnnnnnnnnnnnnnctaaccatttaattcaaatttattcaaaaacataatactaaatatagaggatggtatcattaa |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
55784310 |
caagcacagcttccagctggaagtaaaaagaaaaaaactaaccatttaattcaaatttattcaaaaacataatactaaatatagatgatggtatcattaa |
55784409 |
T |
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| Q |
201 |
cattaccatattgttttttccattatcgagcaacatcatgcaatctctcgagcttccttccatc |
264 |
Q |
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| T |
55784410 |
cattaccatattgttttttccattatcgagcaacatcatgcaatctctcgagcttccttccatc |
55784473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 339 - 484
Target Start/End: Original strand, 55848730 - 55848875
Alignment:
| Q |
339 |
gcaatttgaagacaattaatatacaatacaaagattaggctatttagttttagagaatactttaccctcaactcatcagctgttctgcctgcgaacaccc |
438 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55848730 |
gcaatttgaagacaattaatatacaatacaaagattaggctatttagttttagagaatactttaccctcaactcatcagctgttctgcctgcgaacaccc |
55848829 |
T |
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| Q |
439 |
cagagtacttttcggatgtcaatatctttgcccagtcacatttcat |
484 |
Q |
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| T |
55848830 |
cagagtacttttcggatgtcaatatctttgcccagtcacatttcat |
55848875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 339 - 439
Target Start/End: Original strand, 55784548 - 55784648
Alignment:
| Q |
339 |
gcaatttgaagacaattaatatacaatacaaagattaggctatttagttttagagaatactttaccctcaactcatcagctgttctgcctgcgaacaccc |
438 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55784548 |
gcaatttgaagacaattaatatacaatacaaagattaggctatttagttttagagaatactttaccctcaactcatcagctgttctgcctgcgaacaccc |
55784647 |
T |
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| Q |
439 |
c |
439 |
Q |
| |
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| |
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| T |
55784648 |
c |
55784648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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