View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21140_high_3 (Length: 439)
Name: NF21140_high_3
Description: NF21140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21140_high_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 33925525 - 33925963
Alignment:
| Q |
1 |
taatatcgatcttgcggtttgcaacaaatgcaatcaatattatagttgcaatttcgctgcagaatcaattaaaagttgaactgcaatttagaactatata |
100 |
Q |
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| T |
33925525 |
taatatcgatcttgcggtttgcaacaaatgcaatcaatattatagttgcaatttcgctgcagaatcaattaaaagttgaactgcaatttagaactatata |
33925624 |
T |
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| Q |
101 |
tgaacaatcaaatcatcagcgtttaaccagaaaactaatcatcaacttctactactgattcagtcactaacctaaaattaaacatagcgtagaaaagatc |
200 |
Q |
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| T |
33925625 |
tgaacaatcaaatcatcagcgtttaaccagaaaactaatcatcaacttctactactgattcagtcactaacctaaaattaaacatagcgtagaaaagatc |
33925724 |
T |
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| Q |
201 |
agagaatgtacagaaaatattaactactttgcgtgaaattcgtagtttcttacctagttaaaatcatcttcatcgctaaaccctaacaattcgaaaaaac |
300 |
Q |
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| T |
33925725 |
agagaatgtacagaaaatattaactactttgcgtgaaattcgtagtttcttacctagttaaaatcatcttcatcgctaaaccctaacaattcgaaaaaac |
33925824 |
T |
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| Q |
301 |
gaaaacgtacagtttacaacgaaatcgttgattcgaccaattcagctttcagcgttcagcgagccatcatcttcttgaactcttcgaaattcacatttcc |
400 |
Q |
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| T |
33925825 |
gaaaacgtacagtttacaacgaaatcgttgattcgatcaattcagctttcagcgttcagtgagccatcatcttcttgaactcttcgaagttcacatttcc |
33925924 |
T |
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| Q |
401 |
atcaccgtcaacatcaacattactaatcatcttcttaca |
439 |
Q |
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| T |
33925925 |
atcaccgtcaacatcaacattactaatcatcttcttaca |
33925963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 415
Target Start/End: Original strand, 17751253 - 17751312
Alignment:
| Q |
356 |
tcagcgagccatcatcttcttgaactcttcgaaattcacatttccatcaccgtcaacatc |
415 |
Q |
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| T |
17751253 |
tcagctagccatcatcttcttgaactcctcaaagttaacatttccatcaccgtcagcatc |
17751312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 418
Target Start/End: Complemental strand, 17711621 - 17711559
Alignment:
| Q |
356 |
tcagcgagccatcatcttcttgaactcttcgaaattcacatttccatcaccgtcaacatcaac |
418 |
Q |
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| T |
17711621 |
tcagcgagtcatcatcttcttgaactcatcaaagttaacttttccatcaccgtcggcatcaac |
17711559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 418
Target Start/End: Original strand, 30196323 - 30196376
Alignment:
| Q |
365 |
catcatcttcttgaactcttcgaaattcacatttccatcaccgtcaacatcaac |
418 |
Q |
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| T |
30196323 |
catcatcttcttaaactcttcaaaattcacattcccatcagcatcagcatcaac |
30196376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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