View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21140_low_1 (Length: 667)
Name: NF21140_low_1
Description: NF21140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21140_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 279 - 659
Target Start/End: Complemental strand, 36756606 - 36756226
Alignment:
| Q |
279 |
agatacccttatgtttctctttctatagcaaaagtgtctatttagttcatagacaagagcagatggcatatgtaaattaatactcaaatttagaaaactt |
378 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36756606 |
agatacccttatgtttctctttctatagcaaaagtttctatttagttcatagacaagagcagatggcatatgtaaattaatactcaaatttagaaaactt |
36756507 |
T |
|
| Q |
379 |
gttatagaggaaagaaaaacagaaagcaaaatgttagtttcaaggagaatccaaaacatcaaggtttaagtctggatgccaaacatataacttgcattac |
478 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36756506 |
gttatagaggaaagaaaaacataaagcaaaatgttagtttcaaggagaatccaaaacatcaaggtttaagtctggatgccaaacatacaacttgcattac |
36756407 |
T |
|
| Q |
479 |
cgcgttaccaaatccagctttgtactgcaatgaaatttgatctttcaattcttcaatttcagctttcaacctgtcaattgtaacccagtgattatcttat |
578 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
36756406 |
ggcgttaccaaatccagctttgtactgcaatgaaatttgatctttcaattcttcaattttagctttcaacctgtcaattgtaacccggtgattatcttat |
36756307 |
T |
|
| Q |
579 |
ttgatcagtaatttgacattactcttgcaattttctacgcttaattcgttcaaagttttctttaatttatctcgttcatct |
659 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
36756306 |
ttgatcagtaatttgacattactcttgcaattttctacgcttaattcgttcaaagttttctttaatttatcccattcatct |
36756226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 36756869 - 36756659
Alignment:
| Q |
19 |
gtagattttacttccaccgtggaaacaagagtttccaaacagctaactggtctaaccgtgtatatctcatcaagataatgatatatcgatgactctattt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
36756869 |
gtagattttacttccaccgtggaaacaagagtttccaaacagctaactggtctaaccgtgtatatctcatcaagataatgatttattgatgactctattt |
36756770 |
T |
|
| Q |
119 |
actatgcgggtttgagattttacagcatattatggctgaaccttcctcaccaggataccgtagcagagttggttttggagactgaacttcttcatgtgct |
218 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36756769 |
actatgcgggtttgagattttacagcgtattatggctgaaccttcttcaccaggataccgtagcagagttggttttggagactgaacttcttcatgtgct |
36756670 |
T |
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| Q |
219 |
tgaagtagtag |
229 |
Q |
| |
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||||| ||||| |
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| T |
36756669 |
tgaagaagtag |
36756659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 435 - 628
Target Start/End: Complemental strand, 36749124 - 36748931
Alignment:
| Q |
435 |
catcaaggtttaagtctggatgccaaacatataacttgcattaccgcgttaccaaatccagctttgtactgcaatgaaatttgatctttcaattcttcaa |
534 |
Q |
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||||||||||||||||| |||| ||| |||||||||| ||||||||||| ||||||||||||||||||||||||| |||||| ||| |||||||||| |
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| T |
36749124 |
catcaaggtttaagtcttcatgcaaaaaatataacttgatttaccgcgttatcaaatccagctttgtactgcaatgagttttgatattttaattcttcaa |
36749025 |
T |
|
| Q |
535 |
tttcagctttcaacctgtcaattgtaacccagtgattatcttatttgatcagtaatttgacattactcttgcaattttctacgcttaattcgtt |
628 |
Q |
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||||||| || |||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||| || |||||||| ||||| |||| |
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| T |
36749024 |
tttcagcatttaacctgtcaaccgtaacccagtgattatcttctttgatctgtaatttgacattactcttggaactttctacgtttaatacgtt |
36748931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 560 - 659
Target Start/End: Complemental strand, 36755938 - 36755839
Alignment:
| Q |
560 |
aacccagtgattatcttatttgatcagtaatttgacattactcttgcaattttctacgcttaattcgttcaaagttttctttaatttatctcgttcatct |
659 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
36755938 |
aacccagtgattatcttcttcgatcagtaatttgacattactcttggaattttctacgcttaattcgtccaaagttttctttaatttatcccgttcatct |
36755839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 437 - 555
Target Start/End: Complemental strand, 21138790 - 21138672
Alignment:
| Q |
437 |
tcaaggtttaagtctggatgccaaacatataacttgcattaccgcgttaccaaatccagctttgtactgcaatgaaatttgatctttcaattcttcaatt |
536 |
Q |
| |
|
|||||||||||||| ||||| ||| ||| ||||||| | ||||| ||| || | || ||||||||||||| ||| |||| || |||| |||||||||| |
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| T |
21138790 |
tcaaggtttaagtcctgatgcaaaaaatacaacttgcttcaccgccttatcataaccggctttgtactgcactgacattttatacttcagttcttcaatt |
21138691 |
T |
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| Q |
537 |
tcagctttcaacctgtcaa |
555 |
Q |
| |
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||||| |||||| |||||| |
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| T |
21138690 |
tcagccttcaacttgtcaa |
21138672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 492 - 546
Target Start/End: Complemental strand, 36772068 - 36772014
Alignment:
| Q |
492 |
ccagctttgtactgcaatgaaatttgatctttcaattcttcaatttcagctttca |
546 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||| ||||||||| |||| |
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|
| T |
36772068 |
ccagctttgtactgcaaagaaatttgatctttcagttctttaatttcagccttca |
36772014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 409 - 449
Target Start/End: Complemental strand, 36772210 - 36772170
Alignment:
| Q |
409 |
atgttagtttcaaggagaatccaaaacatcaaggtttaagt |
449 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||| |||| |
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| T |
36772210 |
atgttagtttcaagaagaatccaaaacatcaaggttcaagt |
36772170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 610 - 659
Target Start/End: Complemental strand, 36767406 - 36767357
Alignment:
| Q |
610 |
tttctacgcttaattcgttcaaagttttctttaatttatctcgttcatct |
659 |
Q |
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|||| ||||||||||||| ||||| ||||||||| ||||| ||||||||| |
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| T |
36767406 |
tttccacgcttaattcgtccaaagatttctttaaattatcccgttcatct |
36767357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 357 - 397
Target Start/End: Complemental strand, 36749358 - 36749318
Alignment:
| Q |
357 |
aatactcaaatttagaaaacttgttatagaggaaagaaaaa |
397 |
Q |
| |
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||||||||||||||||||| |||||| ||||||||| |||| |
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|
| T |
36749358 |
aatactcaaatttagaaaatttgttacagaggaaagcaaaa |
36749318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 36767686 - 36767622
Alignment:
| Q |
333 |
aagagcagatggcatatgtaaattaatactcaaatttagaaaacttgttatagaggaaagaaaaa |
397 |
Q |
| |
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||||| ||||||||||| |||| |||||| |||||||||||||| | || ||||||||| |||| |
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| T |
36767686 |
aagagaagatggcatatctaaaccaatactaaaatttagaaaactagctacagaggaaagcaaaa |
36767622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 437 - 548
Target Start/End: Original strand, 23432613 - 23432724
Alignment:
| Q |
437 |
tcaaggtttaagtctggatgccaaacatataacttgcattaccgcgttaccaaatccagctttgtactgcaatgaaatttgatctttcaattcttcaatt |
536 |
Q |
| |
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|||||||||||| | ||||| ||| ||| ||||||| ||||||| || || | || ||||||||||| |||||||||| | |||||||| |||||| |
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| T |
23432613 |
tcaaggtttaagccctgatgcaaaatatacaacttgccttaccgccttttcatagccggctttgtactgtaatgaaattttacgcttcaattcctcaatt |
23432712 |
T |
|
| Q |
537 |
tcagctttcaac |
548 |
Q |
| |
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||||| |||||| |
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| T |
23432713 |
tcagccttcaac |
23432724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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