View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21140_low_10 (Length: 238)
Name: NF21140_low_10
Description: NF21140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21140_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 33926087 - 33926306
Alignment:
| Q |
1 |
ttttccaggttcagtacagtgaaaatcagcgaattctttcagatcaatgaaaccgtcgccgttttgatcgagttcttccatcatgcgtttcacttcttct |
100 |
Q |
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| T |
33926087 |
ttttccaggttcagtgcagtgaaaatcagcgaattctttcagatcaatgaaaccgtcgccgttttgatcgagttcttccatcatgcgtttcacttcttct |
33926186 |
T |
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| Q |
101 |
gatgtagtttctgatccgagtgttaaaagcatttctttgagttctgagcgtgagatttttccatcgccgtttttgtcgaacttgctgaagatcttgcgca |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33926187 |
gatgtagtttctgatccgagcgttaaaagcatttctttgagttctgagcgtgagatttttccatcgccgtttttgtcgaacttgctgaagatcttgcgca |
33926286 |
T |
|
| Q |
201 |
cttcatcatccatggcggag |
220 |
Q |
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|||||||||||||||||||| |
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| T |
33926287 |
cttcatcatccatggcggag |
33926306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 1892682 - 1892863
Alignment:
| Q |
20 |
tgaaaatcagcgaattctttcagatcaatgaaaccgtcgccgttttgatcgagttcttccatcatgcgtttcacttcttctgatgtagtttctgatccga |
119 |
Q |
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| T |
1892682 |
tgaaattcagtgaattctttgagatcaatgtaactgtcgccgttctgatcaatttgttccatcatgcgttttacttcattagatgtcgttttggatccaa |
1892781 |
T |
|
| Q |
120 |
gtgttaaaagcatttctttgagttctgagcgtgagatttttccatcgccgtttttgtcgaacttgctgaagatcttgcgcac |
201 |
Q |
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| T |
1892782 |
gcgttgaaagcatttcttccagctctgagacagagatctttccgtcgtcgttcttgtcgaacttgttgaagatgttacgcac |
1892863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 1893150 - 1893072
Alignment:
| Q |
18 |
agtgaaaatcagcgaattctttcagatcaatgaaaccgtcgccgttttgatcgagttcttccatcatgcgtttcacttc |
96 |
Q |
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|||| ||||| | ||||||||| ||||||||| ||||||||||||| ||||| | || ||||||||||||||| ||||| |
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| T |
1893150 |
agtggaaatcggtgaattctttgagatcaatgtaaccgtcgccgttctgatcaatttgttccatcatgcgttttacttc |
1893072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 17711389 - 17711343
Alignment:
| Q |
17 |
cagtgaaaatcagcgaattctttcagatcaatgaaaccgtcgccgtt |
63 |
Q |
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| T |
17711389 |
cagtggaaatcagcgaattctttgagatctatgtaaccgtcgccgtt |
17711343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 17751624 - 17751682
Alignment:
| Q |
159 |
ttccatcgccgtttttgtcgaacttgctgaagatcttgcgcacttcatcatccatggcg |
217 |
Q |
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||||||| || || |||||||||||||||||||| ||||| || || |||||||||||| |
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| T |
17751624 |
ttccatcaccattcttgtcgaacttgctgaagattttgcgaacctcgtcatccatggcg |
17751682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 30196659 - 30196715
Alignment:
| Q |
148 |
gcgtgagatttttccatcgccgtttttgtcgaacttgctgaagatcttgcgcacttc |
204 |
Q |
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||||||||| || || ||||||||||||||||| ||| | ||||||||||| ||||| |
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| T |
30196659 |
gcgtgagatcttcccgtcgccgtttttgtcgaatttgttaaagatcttgcgaacttc |
30196715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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