View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21140_low_2 (Length: 602)
Name: NF21140_low_2
Description: NF21140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21140_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 532; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 13 - 587
Target Start/End: Original strand, 25862710 - 25863283
Alignment:
| Q |
13 |
agaagagttttaattatattctgttaaacatgttgctgaactttaagcataattatttggtgaattttgatgaataaaattggcagggttagttgatggt |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
25862710 |
agaagagttttaattatattctgttaaacatgttgctgaactttaagcataattatttggtgaattttgatgaataaaattggcatggttagttgatggt |
25862809 |
T |
|
| Q |
113 |
ttatgacttaaggtgctattttataatcatttcacctaattacttatctgcatcataattcataaagtttgcagctataaagggctgatcataatcagac |
212 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
25862810 |
ttatgacttaaggtgctattttataatcatttcacctaattacttatctgcatcataatttataaagtttgcagctataaagggctgattataatcagac |
25862909 |
T |
|
| Q |
213 |
aagttagcagcaataaagatattatatcattggaaataattttttaagttgcaaatactata--tctaataccaatacacattcacatacacatcataat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25862910 |
aagttagcagcaataaagatattatatcattggaaataattttttaagttgcaaatactatatatctaataccaatacacattcacatacacatcataat |
25863009 |
T |
|
| Q |
311 |
atttgacatccatcttaatcctcattcatgaaaaaacaatctaaaggatgatacacattttgcttattgttaattgtgctaagatttttactccaagatg |
410 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25863010 |
atttgacatccatcttaatcctcattcatgaaaaaacaatctaaaggatgatacacattttgcttattgttaattgtgctaagatttttactccaagatg |
25863109 |
T |
|
| Q |
411 |
gttctacaagagagacaggttaatcctgctgctagtttgctacatagtccctctgcccttgtagtttaaacaacctcatggtaatggcgatggtggaggc |
510 |
Q |
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| T |
25863110 |
gttctacaagaaagacaggttaatcctgctgctagtttgctacatagtccctctgcccttgtagtttaaacaacctcatggtaatggcaatggtggaggc |
25863209 |
T |
|
| Q |
511 |
aaacctttcctcaagaacaataattccggtagattctgcacagtgtggttaccttcttctttaagcatagttgttct |
587 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25863210 |
aaacctttcctcaagaac---aattccggtagattctgcacagtgtggttaccttcttctttaagcatagttgttct |
25863283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 13 - 587
Target Start/End: Complemental strand, 25481321 - 25480747
Alignment:
| Q |
13 |
agaagagttttaattatattctgttaaacatgttgctgaactttaagcataattatttggtgaattttgatgaataaaattggcagggttagttgatggt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
25481321 |
agaagagttttaattatattctgttaaacatgttgctgaactttaagcattattatttggtgaattttgatgaataaaattggcatggttagttgatggt |
25481222 |
T |
|
| Q |
113 |
ttatgacttaaggtgctattttataatcatttcacctaattacttatctgcatcataattcataaagtttgcagctataaagggctgatcataatcagac |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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|
| T |
25481221 |
ttatgacttaaggtgctattttataatcatttcacctaattacttatctgcatcataattcataaagtttgctgctataaagtgctgatcataatcagac |
25481122 |
T |
|
| Q |
213 |
aagttagcagcaataaagatattatatcattggaaataattttttaagttgcaaatactatatctaataccaatacacattcacatacacatcataatat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25481121 |
aagttagcagcaataaagatattatatcattggaaataattttttaagttacaaatactatatctaataccaatacacattcacatacacatcataatat |
25481022 |
T |
|
| Q |
313 |
ttgacatccatcttaatcctcattcatgaaaaaacaatctaaaggatgatacacattttgcttattgttaattgtgctaagatttttactccaagatggt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25481021 |
ttgacatccatcttaatcctcattcatgaaaaaacaatctaaagaatgatacacattttgcttattgttaattgtgctaagatttttactccaagatggt |
25480922 |
T |
|
| Q |
413 |
tctacaagagagacaggttaatcctgctgctagtttgctacatagtccctctgcccttgtagtttaaacaacctcatggtaatggcgatggtggaggcaa |
512 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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|
| T |
25480921 |
tctacaagatagacaggttaatcctgctgctagtttgctacatagtccctctgcccttgtagtttaaacaacctcatggtaatggaaatgttggaggcaa |
25480822 |
T |
|
| Q |
513 |
acctttcctcaagaacaataattccggtagattctgcacagtgtggttaccttcttctttaagcatagttgttct |
587 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25480821 |
acctttcctcaagaacaacaattccggtagattctgcacagtgtggttaccttcttctttaagcatagttgttct |
25480747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 13 - 358
Target Start/End: Original strand, 25888450 - 25888797
Alignment:
| Q |
13 |
agaagagttttaattatattctgttaaacatgttgctgaactttaagcataattatttggtgaattttgatgaataaaattggcagggttagttgatggt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
25888450 |
agaagagttttaattatattctgttaaacatgttgctgaactttaagcataattatttggtgaattttgatgaataaaattggcatggttagttgatggt |
25888549 |
T |
|
| Q |
113 |
ttatgacttaaggtgctattttataatcatttcacctaattacttatctgcatcataattcataaagtttgcagctataaagggctgatcataatcagac |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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|
| T |
25888550 |
ttatgacttaaggtgctattttataatcatttcacctaattacttatctgcatcataatttataaagtttgcagctataaagggctgattataatcagac |
25888649 |
T |
|
| Q |
213 |
aagttagcagcaataaagatattatatcattggaaataattttttaagttgcaaatac--tatatctaataccaatacacattcacatacacatcataat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25888650 |
aagttagcagcaataaagatattatatcattggaaataattttttaagttgcaaatactatatatctaataccaatacacattcacatacacatcataat |
25888749 |
T |
|
| Q |
311 |
atttgacatccatcttaatcctcattcatgaaaaaacaatctaaagga |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25888750 |
atttgacatccatcttaatcctcattcatgaaaaaacaatctaaagga |
25888797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 28 - 390
Target Start/End: Original strand, 25607560 - 25607939
Alignment:
| Q |
28 |
atattctgttaaacatgttgctgaactttaagcataattatttggtgaattttgatgaataaaattggcagggttagttgatggtttatgacttaaggtg |
127 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||| || ||||||||| |
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|
| T |
25607560 |
atattctgttaaacatgtttctgaactttaagcataatta---ggcgaattttgatgaataaaattggcagggttagttgatgatttgtgccttaaggtg |
25607656 |
T |
|
| Q |
128 |
ctat------tt-------tataatcatttcacctaattacttatctgcatcataattcataaagtttgcagctataaagggctgatcataatcagacaa |
214 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
25607657 |
ctatgatgtcttaaatacatataatcatttcacctaattacttatctgcatcataattcataaagtttgcagctataaagggctgatcataatcagagaa |
25607756 |
T |
|
| Q |
215 |
gttagcagcaataaagatattatatcattggaaataatt----------ttttaagttgcaaatactatatctaataccaatacacattcacatacacat |
304 |
Q |
| |
|
||||||||||||||||||||||||||| || ||| ||| | | ||||| |||||||||| || ||||||| ||||||||||||| |
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|
| T |
25607757 |
gttagcagcaataaagatattatatca-tgtaaaccattggtcattggatataaagttataaatactata------actaatacacgttcacatacacat |
25607849 |
T |
|
| Q |
305 |
cataatatttgacatccatcttaatcctcattcatgaaaaaacaatc----taaaggatgatacacattttgcttattgttaattgtgct |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
25607850 |
cataatatttgacatccatcttaatcctcattcatgaaaaaacaatctaattaaagaatgatacacattttgtttattgttaattgtgct |
25607939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 303 - 392
Target Start/End: Original strand, 25606018 - 25606107
Alignment:
| Q |
303 |
atcataatatttgacatccatcttaatcctcattcatgaaaaaacaatctaaaggatgatacacattttgcttattgttaattgtgctaa |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25606018 |
atcataatatttgacatccatcttaatcctcattcatgaaaaaacaatctaaaggatgatacacattttgcttattgttaattgtgctaa |
25606107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 25843609 - 25843693
Alignment:
| Q |
13 |
agaagagttttaattatattctgttaaacatgttgctgaactttaagcataattatttggtgaattttgatgaataaaattggca |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25843609 |
agaagagttttaattatattctgttaaacatgttgctgaactttaagcataattatttggtgaattttgatgaataaaattggca |
25843693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 500 - 551
Target Start/End: Original strand, 25608242 - 25608293
Alignment:
| Q |
500 |
atggtggaggcaaacctttcctcaagaacaataattccggtagattctgcac |
551 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||| |||||||||||||| |
|
|
| T |
25608242 |
atggtggaggcaaacctttcctcaagaagaacaattctggtagattctgcac |
25608293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 2460523 - 2460441
Alignment:
| Q |
53 |
ctttaagcataattatttggtgaattttgatgaataaaattggcagggttagttgatggtttatgacttaaggtgctatttta |
135 |
Q |
| |
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||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||| |
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|
| T |
2460523 |
ctttatgcataattattaggcgaattttgatgaataaaattggcagggttagttgatggtatgcgacttaaggtgttatttta |
2460441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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