View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21140_low_5 (Length: 422)
Name: NF21140_low_5
Description: NF21140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21140_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Complemental strand, 14405754 - 14405351
Alignment:
| Q |
1 |
atactgcataccaacacacttcatatcctgtgaccctcttgcataaatccttccttcatcatccacatgggccttgaaaggatgatggacccacttatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | || |||||||| ||||||| || |
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| T |
14405754 |
atactgcataccaacacacttcatatcctgtgaccctcttgcataaattcttccttcatcatccacatgggcttcaaacggatgatgatcccacttgtcg |
14405655 |
T |
|
| Q |
101 |
tgttcagcggggaccacatcagtgtgagagtagagcataatggatggaaggtttgaatttgttcctgtccatttgagaaggattagtggttttccggata |
200 |
Q |
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|| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
14405654 |
tgctcggcggggacaacatcagtgtgagagtagagcataatggatggaaggtttgaatttgttcctgtccatttgagaaggattagtggctttccggata |
14405555 |
T |
|
| Q |
201 |
cgaattcgatggtttgagattggagtgagagggagttggcttgtgttgttaggaaattggtagattgagtgtagtttggtgttggatggtctgttctggt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14405554 |
cgaattcgatggtttgagattggagtgagagggagttggcttgtgttgttaggaaattggtagattgagtgtagtttggtgttggatggtctgttctggt |
14405455 |
T |
|
| Q |
301 |
ttgtaggtattgttggaaacgtgatattatgtttgattcttctgaagctttaacatatgttaatgttgttgttattggtagcagaaaagatataaggagg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
14405454 |
ttgtaggtattgttggaaacgtgatattatgtttgattcttctgaagctttaacatatgttaatgttgttgttattgttagcagaaaagatataaggagg |
14405355 |
T |
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| Q |
401 |
atgt |
404 |
Q |
| |
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|||| |
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| T |
14405354 |
atgt |
14405351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 14435344 - 14434998
Alignment:
| Q |
1 |
atactgcataccaacacacttcatatcctgtgaccctcttgcataaatccttccttcatcatccacatgggccttgaaaggatgatggacccacttatca |
100 |
Q |
| |
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||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14435344 |
atactgcatactaacacacttcatatcttgggaccctcttgcataaatccttccttcatcatccacatgggccttgaaaggatgatggacccacttatca |
14435245 |
T |
|
| Q |
101 |
tgttcagcggggaccacatcagtgtgagagtagagcataatggatggaaggtttgaatttgttcctgtccatttgagaaggattagtggttttccggata |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||| || || | | |||| || | ||||||||||| ||| | |||||||||| || |
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| T |
14435244 |
tgttcagcggggaccacatcagtgtgagagtagagcatgatggaaggcagctccgggcttgtaccggcccatttgagaatgatgatgggttttccgggta |
14435145 |
T |
|
| Q |
201 |
cgaattcgatggtttgagattggagtgagagggagttggcttgtgttgttaggaaattggta-gattgagtgtagtttggtgttggatggtctgttctgg |
299 |
Q |
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| |||||||| ||||| |||| ||||||||| || |||| | ||| | ||| |||||||| | ||||||||||||||||| |||||||||| ||| || |
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| T |
14435144 |
ccaattcgattgtttgggattcgagtgagagtgatttggatagtgatatta-gaaattgggaggattgagtgtagtttggggttggatggttggttttga |
14435046 |
T |
|
| Q |
300 |
tttgtaggtattgttggaaacgtgatattatgtttgattcttctgaag |
347 |
Q |
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|||||||||||||||||||||| || || ||||||||||||||||||| |
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|
| T |
14435045 |
tttgtaggtattgttggaaacgggaaatgatgtttgattcttctgaag |
14434998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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