View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21140_low_7 (Length: 293)
Name: NF21140_low_7
Description: NF21140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21140_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 9 - 276
Target Start/End: Complemental strand, 43609826 - 43609559
Alignment:
| Q |
9 |
agcagagaagaatgtcgaagccggaagacaattaacaattgcaccagacagcatagcagaagtataagaaagagcaacaccatgcacattcagagttaaa |
108 |
Q |
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| T |
43609826 |
agcaaagaagaatgtcgaagccggaagacaattaacaattgcaccagacagcatagcagaagtataagaaagagcaacaccatgcacattcagagttaaa |
43609727 |
T |
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| Q |
109 |
gtaagtctgaaaaagcaaccaagtaggattatagacctaattagtcctaagattctatatcaaaataataaaatttggttgaaaaataacagagattaag |
208 |
Q |
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| T |
43609726 |
gtaagtctgaaaaagcaaccaagtaggattatagacctaattagtcctaagattctatatcaaaataataaaatttggttgaaaaataacagagattaag |
43609627 |
T |
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| Q |
209 |
gaataataatgtactaccccaataatgaaagcataaaaatcttgaagatggtcataaatgagaatgtt |
276 |
Q |
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| T |
43609626 |
gaataataatgtactaccccaataatgaaagcataaaaatcttgaagatggtcataaatgagaatgtt |
43609559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 273
Target Start/End: Complemental strand, 43603417 - 43603153
Alignment:
| Q |
9 |
agcagagaagaatgtcgaagccggaagacaattaacaattgcaccagacagcatagcagaagtataagaaagagcaacaccatgcacattcagagttaaa |
108 |
Q |
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| T |
43603417 |
agcaaagaagaatgtacaagcaggaaggcaattaacaatagcagcagccaacgaagcagaagtgtaaacaagggcaataccatgcacattcagagctaaa |
43603318 |
T |
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| Q |
109 |
gtaagtctgaaaaagcaaccaagtaggattatagacctaattagtcctaagattctatatcaaaataataaaatttggttgaaaaataac--agagatta |
206 |
Q |
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| T |
43603317 |
gtaattctg-aaaagcaaccaagaaggattacagaaaaaattagtcctaagattctttgtcaaaatagca----tttgtttagaaatcacatagagatta |
43603223 |
T |
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| Q |
207 |
aggaata---ataatgtactaccccaataatgaaagcataaaaatcttgaagatggtcataaatgagaat |
273 |
Q |
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| T |
43603222 |
aagaataatgataatgtactacccaaatagtgaaagcataaaaatcttgaagatggtcttaaatgagaat |
43603153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 9 - 145
Target Start/End: Complemental strand, 43616371 - 43616236
Alignment:
| Q |
9 |
agcagagaagaatgtcgaagccggaagacaattaacaattgcaccagacagcatagcagaagtataagaaagagcaacaccatgcacattcagagttaaa |
108 |
Q |
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|||| |||||||||| |||||||||||||| |||||||||||| ||| || ||||||||| || |||| |||||||| ||||| |||||||| ||||||| |
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| T |
43616371 |
agcaaagaagaatgttgaagccggaagacagttaacaattgcagcagccaacatagcagacgtgtaagcaagagcaataccattcacattcaaagttaaa |
43616272 |
T |
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| Q |
109 |
gtaagtctgaaaaagcaaccaagtaggattatagacc |
145 |
Q |
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| T |
43616271 |
gtaattctgaaaaa-caacaaagtaggatcatagacc |
43616236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 43614923 - 43614873
Alignment:
| Q |
223 |
taccccaataatgaaagcataaaaatcttgaagatggtcataaatgagaat |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43614923 |
taccccaataatgaaagcataaaaatcttgaagatggttataaatgagaat |
43614873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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