View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21140_low_9 (Length: 256)

Name: NF21140_low_9
Description: NF21140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21140_low_9
NF21140_low_9
[»] chr4 (16 HSPs)
chr4 (67-240)||(50552995-50553168)
chr4 (15-67)||(56556581-56556633)
chr4 (15-66)||(38813554-38813605)
chr4 (15-61)||(38982645-38982691)
chr4 (13-67)||(52816470-52816524)
chr4 (19-67)||(52815662-52815710)
chr4 (15-65)||(56557374-56557424)
chr4 (15-67)||(23454953-23455005)
chr4 (15-67)||(38814376-38814428)
chr4 (13-67)||(53477127-53477181)
chr4 (14-63)||(54590146-54590195)
chr4 (15-67)||(55013137-55013189)
chr4 (16-67)||(23455739-23455790)
chr4 (15-66)||(54591627-54591678)
chr4 (15-67)||(9254405-9254457)
chr4 (15-67)||(13336887-13336939)
[»] chr8 (14 HSPs)
chr8 (15-67)||(34213763-34213815)
chr8 (15-67)||(34665769-34665821)
chr8 (17-67)||(34214580-34214630)
chr8 (15-67)||(38598963-38599015)
chr8 (15-67)||(1232846-1232898)
chr8 (15-67)||(33497665-33497717)
chr8 (15-65)||(1231527-1231577)
chr8 (15-67)||(25288125-25288177)
chr8 (18-66)||(27437571-27437619)
chr8 (15-61)||(34666589-34666635)
chr8 (15-67)||(4463475-4463527)
chr8 (18-66)||(27436563-27436611)
chr8 (15-66)||(7393194-7393245)
chr8 (18-67)||(36623351-36623400)
[»] chr6 (9 HSPs)
chr6 (15-67)||(33401175-33401227)
chr6 (15-67)||(14656479-14656531)
chr6 (15-66)||(33399966-33400017)
chr6 (15-67)||(4116798-4116850)
chr6 (15-67)||(4117596-4117648)
chr6 (15-67)||(17784434-17784486)
chr6 (15-63)||(1661479-1661527)
chr6 (19-67)||(14657262-14657310)
chr6 (15-60)||(8427414-8427459)
[»] chr5 (20 HSPs)
chr5 (15-67)||(20856931-20856983)
chr5 (15-71)||(31107926-31107982)
chr5 (15-61)||(36476770-36476816)
chr5 (15-61)||(36477425-36477471)
chr5 (13-66)||(16533672-16533725)
chr5 (15-67)||(20072918-20072970)
chr5 (15-67)||(39181056-39181108)
chr5 (15-66)||(20072121-20072172)
chr5 (16-67)||(20857597-20857648)
chr5 (15-61)||(16532898-16532944)
chr5 (15-72)||(21979020-21979077)
chr5 (15-67)||(22870511-22870563)
chr5 (15-67)||(8654106-8654158)
chr5 (15-67)||(14744779-14744831)
chr5 (15-66)||(39181845-39181896)
chr5 (15-61)||(21978066-21978112)
chr5 (15-61)||(21972095-21972141)
chr5 (15-67)||(8673807-8673859)
chr5 (15-59)||(22869612-22869656)
chr5 (20-72)||(39402736-39402788)
[»] chr3 (19 HSPs)
chr3 (15-67)||(2944715-2944767)
chr3 (15-66)||(11026681-11026732)
chr3 (15-66)||(45279333-45279384)
chr3 (15-61)||(37249204-37249250)
chr3 (15-67)||(2943912-2943965)
chr3 (15-67)||(1757353-1757405)
chr3 (15-67)||(48189148-48189200)
chr3 (15-61)||(45278549-45278595)
chr3 (15-67)||(29193042-29193094)
chr3 (15-61)||(37249847-37249892)
chr3 (15-61)||(48188383-48188429)
chr3 (15-67)||(22736739-22736791)
chr3 (15-67)||(32717154-32717206)
chr3 (15-66)||(1756550-1756601)
chr3 (16-67)||(29192034-29192085)
chr3 (15-66)||(43105233-43105284)
chr3 (15-53)||(43105883-43105921)
chr3 (15-61)||(44482002-44482048)
chr3 (15-61)||(44476054-44476100)
[»] chr2 (10 HSPs)
chr2 (15-67)||(20982523-20982575)
chr2 (15-67)||(29957816-29957868)
chr2 (15-67)||(20101769-20101821)
chr2 (15-66)||(20983310-20983361)
chr2 (15-67)||(24387350-24387402)
chr2 (15-66)||(29958596-29958647)
chr2 (15-67)||(20103193-20103245)
chr2 (15-67)||(24388305-24388357)
chr2 (15-66)||(25623288-25623339)
chr2 (15-66)||(25624482-25624533)
[»] chr7 (16 HSPs)
chr7 (15-66)||(27479987-27480038)
chr7 (15-67)||(27480796-27480848)
chr7 (15-67)||(37284108-37284160)
chr7 (15-67)||(38643549-38643601)
chr7 (13-67)||(12643099-12643153)
chr7 (15-61)||(22661362-22661408)
chr7 (15-67)||(4227221-4227273)
chr7 (15-67)||(7158230-7158282)
chr7 (15-67)||(12930771-12930823)
chr7 (15-67)||(37289359-37289411)
chr7 (15-67)||(45915857-45915909)
chr7 (15-67)||(12929286-12929338)
chr7 (15-67)||(45914525-45914577)
chr7 (17-67)||(4226124-4226174)
chr7 (15-65)||(12644182-12644232)
chr7 (15-67)||(47558029-47558081)
[»] chr1 (12 HSPs)
chr1 (15-67)||(49093040-49093092)
chr1 (13-67)||(13295627-13295681)
chr1 (15-61)||(46282842-46282888)
chr1 (15-61)||(50062997-50063043)
chr1 (15-66)||(46282071-46282122)
chr1 (15-61)||(32619389-32619435)
chr1 (15-76)||(25064923-25064984)
chr1 (15-67)||(2828192-2828244)
chr1 (15-66)||(51935248-51935299)
chr1 (17-67)||(13295134-13295184)
chr1 (15-61)||(32622405-32622451)
chr1 (15-63)||(25066007-25066055)
[»] scaffold0347 (2 HSPs)
scaffold0347 (15-66)||(13609-13660)
scaffold0347 (15-64)||(14642-14691)
[»] scaffold0182 (2 HSPs)
scaffold0182 (15-67)||(14426-14478)
scaffold0182 (13-67)||(13133-13187)
[»] scaffold0009 (2 HSPs)
scaffold0009 (15-67)||(261000-261052)
scaffold0009 (15-67)||(262490-262542)
[»] scaffold1493 (1 HSPs)
scaffold1493 (15-67)||(592-644)
[»] scaffold0018 (1 HSPs)
scaffold0018 (15-66)||(73109-73160)


Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 67 - 240
Target Start/End: Original strand, 50552995 - 50553168
Alignment:
Q  67 tctttaaaatcataaacgcccaacatgtgtgatcgtatatctttattagctatactattaccatcgtgccatggtgtaatttaaagtgctaacaagtaaa 166  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50552995 tctttaaaatcataaacgcccaacatgtgtgatcttatatctttattagctatactattaccatcgtgccatggtgtaatttaaagtgctaacaagtaaa 50553094  T
Q  167 gatccacgcccacttttgtaaaggagaaggtattgtgtatttttccttaccttagtgtgatcatcattagaagc 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  50553095 gatccacgcccacttttgtaaaggagaaggtattgtgtatttttccttaccttagtgtgatcatcattggaagc 50553168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 56556633 - 56556581
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  56556633 gatgaaaaatcaaacggcctataattacagggatgaaaagcatatttaagcct 56556581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 38813605 - 38813554
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcc 66  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38813605 gatgaaaaatcaaacggcctataattacagggatgaaaagcatatttaagcc 38813554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 38982645 - 38982691
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatattt 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  38982645 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatattt 38982691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 52816470 - 52816524
Alignment:
Q  13 gagatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  52816470 gagatgaaaaatcaaacggcctataattacagggatgaaaatcatatttaagcct 52816524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 52815710 - 52815662
Alignment:
Q  19 aaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  52815710 aaaaatcaaacggcctataattacagggatgaaaagcatatttaagcct 52815662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 56557374 - 56557424
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagc 65  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  56557374 gatgaaaaatcaaacggcctataattagagggatgaaaagcatatttaagc 56557424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 23455005 - 23454953
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  23455005 gatgaaaaatcaaatggcctataattacagggatgaaatgcatatttaagcct 23454953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 38814376 - 38814428
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    ||||||||||||||||||||| |||| || |||||||||||||||||||||||    
T  38814376 gatgaaaaatcaaacggcctaaaattacaaggatgaaaagcatatttaagcct 38814428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 53477127 - 53477181
Alignment:
Q  13 gagatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||||| | ||||||||||||| ||||||| ||||||||||||||    
T  53477127 gagatgaaaaatcaaatgacctataattgcagagatgaaatgcatatttaagcct 53477181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 54590195 - 54590146
Alignment:
Q  14 agatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaa 63  Q
    ||||||||||||||| | ||||||||||||||||||||| ||||||||||    
T  54590195 agatgaaaaatcaaatgacctataattgcagggatgaaatgcatatttaa 54590146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 55013137 - 55013189
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    ||||||||||||||  |||||||||| || |||||||||||||||||||||||    
T  55013137 gatgaaaaatcaaatagcctataattacatggatgaaaagcatatttaagcct 55013189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 23455739 - 23455790
Alignment:
Q  16 atgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    ||||||||||||| | ||||||||| ||||||||||| ||||||||||||||    
T  23455739 atgaaaaatcaaatgacctataattacagggatgaaatgcatatttaagcct 23455790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 54591627 - 54591678
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcc 66  Q
    |||||||||||||| |  |||||||||||||||||||| |||||||||||||    
T  54591627 gatgaaaaatcaaatgatctataattgcagggatgaaatgcatatttaagcc 54591678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 9254457 - 9254405
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||  ||||| |||||||| |||||||||||||| |||||||| |||||    
T  9254457 gatgaaatttcaaatggcctatatttgcagggatgaaatgcatattttagcct 9254405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 13336887 - 13336939
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||  ||||| | |||||| |||||||||||||| ||||||||||||||    
T  13336887 gatgaaatttcaaatgacctatatttgcagggatgaaatgcatatttaagcct 13336939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 34213815 - 34213763
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34213815 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 34213763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 34665821 - 34665769
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34665821 gatgaaaaatcaaacggcctataattacagggatgaaaagcatatttaagcct 34665769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 34214580 - 34214630
Alignment:
Q  17 tgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34214580 tgaaaaatcaaacggcctataattacagggatgaaaagcatatttaagcct 34214630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 38599015 - 38598963
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  38599015 gatgaaaaatcaaatggcctataattgcagggatgaaatgcatatttaagcct 38598963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 1232846 - 1232898
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  1232846 gatgaaaaatcaaatggcctataattacagggatgaaatgcatatttaagcct 1232898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 33497665 - 33497717
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||| | ||||||||| ||||||||||||||||||||||||||    
T  33497665 gatgaaaaatcaaatgccctataattacagggatgaaaagcatatttaagcct 33497717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 1231577 - 1231527
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagc 65  Q
    |||||||||||||| |||||||||||| |||||||||| ||||||||||||    
T  1231577 gatgaaaaatcaaagggcctataattgtagggatgaaatgcatatttaagc 1231527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 25288125 - 25288177
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||| | ||||||||||||| ||||||| ||||||||||||||    
T  25288125 gatgaaaaatcaaatgacctataattgcagtgatgaaatgcatatttaagcct 25288177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 27437571 - 27437619
Alignment:
Q  18 gaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcc 66  Q
    ||||| |||||||||||||| |||||||||||||| |||||||||||||    
T  27437571 gaaaattcaaacggcctatatttgcagggatgaaatgcatatttaagcc 27437619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 34666589 - 34666635
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatattt 61  Q
    |||||||||||||||||||||||||| ||| |||||||| |||||||    
T  34666589 gatgaaaaatcaaacggcctataattacagcgatgaaaaacatattt 34666635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 4463475 - 4463527
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||  ||||| |||||||| |||||||||||||| ||||||||||||||    
T  4463475 gatgaaatttcaaatggcctatacttgcagggatgaaatgcatatttaagcct 4463527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 27436611 - 27436563
Alignment:
Q  18 gaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcc 66  Q
    ||||| ||||||| |||||| |||||||||||||| |||||||||||||    
T  27436611 gaaaattcaaacgacctatatttgcagggatgaaatgcatatttaagcc 27436563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 7393194 - 7393245
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcc 66  Q
    |||||||||||||| | ||||||||||||||||||||| |  ||||||||||    
T  7393194 gatgaaaaatcaaatgacctataattgcagggatgaaatgtctatttaagcc 7393245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 36623400 - 36623351
Alignment:
Q  18 gaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    ||||| ||||| |||||||| ||||||||| ||||| |||||||||||||    
T  36623400 gaaaattcaaatggcctatatttgcagggacgaaaaacatatttaagcct 36623351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 33401175 - 33401227
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33401175 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 33401227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 14656531 - 14656479
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14656531 gatgaaaaatcaaacagcctataattgcagggatgaaaagcatatttaagcct 14656479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 33400017 - 33399966
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcc 66  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33400017 gatgaaaaatcaaacggcctataattacagggatgaaaagcatatttaagcc 33399966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 4116850 - 4116798
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  4116850 gatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 4116798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 4117596 - 4117648
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  4117596 gatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 4117648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 17784434 - 17784486
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  17784434 gatgaaaaatcaaatggcctatcattgcagggatgaaaagcatatttaagcct 17784486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 1661479 - 1661527
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaa 63  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||    
T  1661479 gatgaaaaatcaaacggcctataattacagggatgaaaatcatatttaa 1661527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 14657262 - 14657310
Alignment:
Q  19 aaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||    
T  14657262 aaaaatcaaacggcctataattatagggatgaaaagcatatttaagcct 14657310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 8427414 - 8427459
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatt 60  Q
    |||||||||||||| | ||||||||||||||||||||| |||||||    
T  8427414 gatgaaaaatcaaatgacctataattgcagggatgaaatgcatatt 8427459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 20856983 - 20856931
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  20856983 gatgaaaaatcaaacggcctataattacagggatgaaaagcatatttaagcct 20856931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 31107982 - 31107926
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcctcttt 71  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  31107982 gatgaaaaatcaaatggcctataattgcagggatgaaatgcatatttaagcctcttt 31107926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 36476816 - 36476770
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatattt 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  36476816 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatattt 36476770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 36477425 - 36477471
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatattt 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  36477425 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatattt 36477471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 16533672 - 16533725
Alignment:
Q  13 gagatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcc 66  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  16533672 gagatgaaaaatcaaacggcctataattatagggatgaaaagcatatttaagcc 16533725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 20072918 - 20072970
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  20072918 gatgaaaaatcaaacgacctataattacagggatgaaaagcatatttaagcct 20072970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 39181108 - 39181056
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  39181108 gatgaaaaatcaaacggcttataattacagggatgaaaagcatatttaagcct 39181056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 20072172 - 20072121
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcc 66  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  20072172 gatgaaaaatcaaacggcctataattacagagatgaaaagcatatttaagcc 20072121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 20857597 - 20857648
Alignment:
Q  16 atgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  20857597 atgaaaaatcaaacggcctataattacatggatgaaaagcatatttaagcct 20857648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 16532944 - 16532898
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatattt 61  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  16532944 gatgaaaaatcaaacggcctataattacagggatgaaaagcatattt 16532898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 21979020 - 21979077
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcctcttta 72  Q
    |||||||||||||| ||| ||||||||||||||||||| |||||||||||||| ||||    
T  21979020 gatgaaaaatcaaatggcttataattgcagggatgaaatgcatatttaagcctattta 21979077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 22870511 - 22870563
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  22870511 gatgaaaaatcaaatggcctataattacagggatgaaatgcatatttaagcct 22870563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 8654158 - 8654106
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||| | ||||||||| |||||||||||| |||||||||||||    
T  8654158 gatgaaaaatcaaatgacctataattacagggatgaaaaacatatttaagcct 8654106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 14744779 - 14744831
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||| | | ||||||||||||||||||| ||||||||||||||    
T  14744779 gatgaaaaatcaaatgacatataattgcagggatgaaatgcatatttaagcct 14744831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 39181845 - 39181896
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcc 66  Q
    |||||||||||||||| ||||||||| ||||||| |||| ||||||||||||    
T  39181845 gatgaaaaatcaaacgacctataattacagggattaaaaacatatttaagcc 39181896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 21978066 - 21978112
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatattt 61  Q
    |||||||||||||| |||| |||||| ||||||||||||||||||||    
T  21978066 gatgaaaaatcaaatggcccataattacagggatgaaaagcatattt 21978112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 21972141 - 21972095
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatattt 61  Q
    |||||||||||||| |||| |||||| |||||||||||| |||||||    
T  21972141 gatgaaaaatcaaatggcccataattacagggatgaaaaacatattt 21972095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 8673807 - 8673859
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||  ||||| |||||||| |||||||||||||| |||||||| |||||    
T  8673807 gatgaaatttcaaatggcctatatttgcagggatgaaatgcatattttagcct 8673859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 22869656 - 22869612
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatat 59  Q
    |||||||||||||| ||||||||||| || |||||||| ||||||    
T  22869656 gatgaaaaatcaaatggcctataattacaaggatgaaatgcatat 22869612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 39402736 - 39402788
Alignment:
Q  20 aaaatcaaacggcctataattgcagggatgaaaagcatatttaagcctcttta 72  Q
    ||||||||| | |||||||||||| ||||||||| ||||||||| ||| ||||    
T  39402736 aaaatcaaatgacctataattgcatggatgaaaaacatatttaatcctattta 39402788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 2944715 - 2944767
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2944715 gatgaaaaatcaaacggcctataattacagggatgaaaagcatatttaagcct 2944767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 11026681 - 11026732
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcc 66  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11026681 gatgaaaaatcaaacggcctataattacagggatgaaaagcatatttaagcc 11026732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 45279333 - 45279384
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcc 66  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  45279333 gatgaaaaatcaaacggcctataattacagggatgaaaagcatatttaagcc 45279384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 37249250 - 37249204
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatattt 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  37249250 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatattt 37249204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 2943965 - 2943912
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggat-gaaaagcatatttaagcct 67  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2943965 gatgaaaaatcaaacggcctataattgcagggatagaaaagcatatttaagcct 2943912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 1757353 - 1757405
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  1757353 gatgaaaaatcaaacggcctataattacagggatgaaaatcatatttaagcct 1757405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 48189148 - 48189200
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  48189148 gatgaaaaatcaaacggcctataattacaaggatgaaaagcatatttaagcct 48189200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 45278595 - 45278549
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatattt 61  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  45278595 gatgaaaaatcaaacggcctataattacagggatgaaaagcatattt 45278549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 29193042 - 29193094
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  29193042 gatgaaaaatcaaatggcctataattacagggatgaaatgcatatttaagcct 29193094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 37249847 - 37249892
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatattt 61  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  37249847 gatgaaaaatcaaacggcctataattgca-ggatgaaaagcatattt 37249892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 48188429 - 48188383
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatattt 61  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||    
T  48188429 gatgaaaaatcaaacggcctataattacagggatgaaaaacatattt 48188383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 22736739 - 22736791
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||| | ||||||||| |||||||||||| |||||||||||||    
T  22736739 gatgaaaaatcaaatgacctataattacagggatgaaaaacatatttaagcct 22736791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 32717154 - 32717206
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||| | ||||||||| ||||||||||| ||||||||||||||    
T  32717154 gatgaaaaatcaaatgacctataattacagggatgaaatgcatatttaagcct 32717206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 1756601 - 1756550
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcc 66  Q
    |||||||||||||||||||||||||| || |||||||||  |||||||||||    
T  1756601 gatgaaaaatcaaacggcctataattacaaggatgaaaaatatatttaagcc 1756550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 29192085 - 29192034
Alignment:
Q  16 atgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    ||||||||||||| ||||||||||| ||||||||||| |||||||| |||||    
T  29192085 atgaaaaatcaaatggcctataattacagggatgaaatgcatatttcagcct 29192034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 43105284 - 43105233
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcc 66  Q
    |||||||||||||||||||||||||| || ||||| ||| ||||||||||||    
T  43105284 gatgaaaaatcaaacggcctataattacaaggatgtaaaacatatttaagcc 43105233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 43105883 - 43105921
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaa 53  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  43105883 gatgaaaaatcaaacggcctataattacagggatgaaaa 43105921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 44482002 - 44482048
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatattt 61  Q
    |||||||||||||| |||| |||||| ||||||||||||||||||||    
T  44482002 gatgaaaaatcaaatggcccataattacagggatgaaaagcatattt 44482048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 44476100 - 44476054
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatattt 61  Q
    |||||||||||||| |||| |||||| |||||||||||| |||||||    
T  44476100 gatgaaaaatcaaatggcccataattacagggatgaaaaacatattt 44476054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 20982575 - 20982523
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  20982575 gatgaaaaatcaaacggcctataattacagggatgaaaagcatatttaagcct 20982523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 29957868 - 29957816
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29957868 gatgaaaaatcaaacggcctataattacagggatgaaaagcatatttaagcct 29957816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 20101821 - 20101769
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  20101821 gatgaaaaatcaaatggcctataattacagggatgaaaagcatatttaagcct 20101769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 20983310 - 20983361
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcc 66  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  20983310 gatgaaaaatcaaacggtctataattacagggatgaaaagcatatttaagcc 20983361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 24387402 - 24387350
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||| ||| ||||||||||||||||||||||| ||||||||||||||    
T  24387402 gatgaaaaattaaatggcctataattgcagggatgaaatgcatatttaagcct 24387350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 29958596 - 29958647
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcc 66  Q
    ||||||||||||||| |||||||||| |||||||||||| ||||||||||||    
T  29958596 gatgaaaaatcaaacagcctataattacagggatgaaaaacatatttaagcc 29958647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 20103193 - 20103245
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    ||||||||||| || ||||||||||| ||||||| ||||||||||||||||||    
T  20103193 gatgaaaaatctaatggcctataattacagggataaaaagcatatttaagcct 20103245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 24388305 - 24388357
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    ||||||||||||||  || ||||||||||||||||||| ||||||||||||||    
T  24388305 gatgaaaaatcaaattgcttataattgcagggatgaaatgcatatttaagcct 24388357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 25623339 - 25623288
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcc 66  Q
    |||||||||||||| |||||||||||  |||||||||| |||||||||||||    
T  25623339 gatgaaaaatcaaatggcctataattatagggatgaaatgcatatttaagcc 25623288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 25624482 - 25624533
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcc 66  Q
    |||||||||||||| | ||||||||| ||||||||||| |||||||||||||    
T  25624482 gatgaaaaatcaaatgacctataattacagggatgaaatgcatatttaagcc 25624533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 27480038 - 27479987
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcc 66  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27480038 gatgaaaaatcaagcggcctataattgcagggatgaaaagcatatttaagcc 27479987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 27480796 - 27480848
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  27480796 gatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 27480848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 37284160 - 37284108
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  37284160 gatgaaaaatcaaatggcctataattacagggatgaaaagcatatttaagcct 37284108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 38643601 - 38643549
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  38643601 gatgaaaaatcaaatggcctataattgcagggatgaaatgcatatttaagcct 38643549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 12643153 - 12643099
Alignment:
Q  13 gagatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  12643153 gagatgaaaaatcaaatggcctataattacagggatgaaatgcatatttaagcct 12643099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 22661408 - 22661362
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatattt 61  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  22661408 gatgaaaaatcaaacggcctataattacagggatgaaaagcatattt 22661362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 4227221 - 4227273
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  4227221 gatgaaaaatcaaatggcctataattacagggatgaaatgcatatttaagcct 4227273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 7158282 - 7158230
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||| |||||||||||| |||||||||| ||||||||||||||    
T  7158282 gatgaaaaatcaaatggcctataattgtagggatgaaatgcatatttaagcct 7158230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 12930823 - 12930771
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||| | ||||||||||||||||||||| ||||||||||||||    
T  12930823 gatgaaaaatcaaatgacctataattgcagggatgaaatgcatatttaagcct 12930771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 37289359 - 37289411
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||||||||||||    
T  37289359 gatgaaaaaccaaatggcctataattacagggatgaaaagcatatttaagcct 37289411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 45915857 - 45915909
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  45915857 gatgaaaaatcaaatggcctataattacagggatgaaatgcatatttaagcct 45915909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 12929338 - 12929286
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    ||||||||||||||  ||||||| |||||||||||||| ||||||||||||||    
T  12929338 gatgaaaaatcaaatagcctatatttgcagggatgaaatgcatatttaagcct 12929286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 45914577 - 45914525
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||| ||||||||||| ||| ||||||| ||||||||||||||    
T  45914577 gatgaaaaatcaaatggcctataattacagagatgaaatgcatatttaagcct 45914525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 4226174 - 4226124
Alignment:
Q  17 tgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||| ||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  4226174 tgaagaatcaaatggcctataattacagggatgaaatgcatatttaagcct 4226124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 12644182 - 12644232
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagc 65  Q
    |||||||||||||| ||||| |||||  |||||||||| ||||||||||||    
T  12644182 gatgaaaaatcaaatggcctgtaattatagggatgaaatgcatatttaagc 12644232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 47558081 - 47558029
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    ||||||||||||||  ||||||||||  || ||||||| ||||||||||||||    
T  47558081 gatgaaaaatcaaatagcctataattaaagagatgaaatgcatatttaagcct 47558029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 49093092 - 49093040
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  49093092 gatgaaaaatcaaacggcctataattacagggatgaaaagcatgtttaagcct 49093040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 13295627 - 13295681
Alignment:
Q  13 gagatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  13295627 gagatgaaaaatcaaatggcctataattacagggatgaaatgcatatttaagcct 13295681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 46282842 - 46282888
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatattt 61  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  46282842 gatgaaaaatcaaacggcctataattacagggatgaaaagcatattt 46282888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 50062997 - 50063043
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatattt 61  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  50062997 gatgaaaaatcaaacggcctataattacagggatgaaaagcatattt 50063043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 46282122 - 46282071
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcc 66  Q
    |||||||||||||||| ||||||||| |||||||||||| ||||||||||||    
T  46282122 gatgaaaaatcaaacgacctataattacagggatgaaaaacatatttaagcc 46282071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 32619435 - 32619389
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatattt 61  Q
    |||||||||||||| |||| |||||| ||||||||||||||||||||    
T  32619435 gatgaaaaatcaaatggcccataattacagggatgaaaagcatattt 32619389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 25064984 - 25064923
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcctctttaaaat 76  Q
    ||||||||||||||   ||||||||||||||||||||| |||||||||| |||  |||||||    
T  25064984 gatgaaaaatcaaattacctataattgcagggatgaaatgcatatttaatcctacttaaaat 25064923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 2828244 - 2828192
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||| |  ||||||||||| |||||||| ||||||||||||||    
T  2828244 gatgaaaaatcaaatgatctataattgcaaggatgaaatgcatatttaagcct 2828192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 51935248 - 51935299
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcc 66  Q
    |||||||||||||| | | ||||||| || ||||||||||||||||||||||    
T  51935248 gatgaaaaatcaaatgacatataattacatggatgaaaagcatatttaagcc 51935299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 13295184 - 13295134
Alignment:
Q  17 tgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||| | ||||||||| ||||| ||||| ||||||||||||||    
T  13295184 tgaaaaatcaaatgacctataattacaggggtgaaatgcatatttaagcct 13295134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 32622405 - 32622451
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatattt 61  Q
    |||||||||||||| |||| |||||| |||||||||||| |||||||    
T  32622405 gatgaaaaatcaaatggcccataattacagggatgaaaaacatattt 32622451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 25066007 - 25066055
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaa 63  Q
    |||||||||||||| ||| |||||||  |||||||||| ||||||||||    
T  25066007 gatgaaaaatcaaatggcttataattatagggatgaaatgcatatttaa 25066055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 13660 - 13609
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcc 66  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  13660 gatgaaaaatcaaatggcctataattgcagggatgaaatgcatatttaagcc 13609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 14642 - 14691
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaag 64  Q
    |||||||||||||| |||||||||||| ||| |||||| |||||||||||    
T  14642 gatgaaaaatcaaatggcctataattgaaggaatgaaatgcatatttaag 14691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 14426 - 14478
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||    
T  14426 gatgaaaaatcaaatggcctataattacaggggtgaaaagcatatttaagcct 14478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 13187 - 13133
Alignment:
Q  13 gagatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||||| || ||||| || ||||||||||||||||||||||||||    
T  13187 gagatgaaaaatcaaatggtctatatttacagggatgaaaagcatatttaagcct 13133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 261052 - 261000
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||| | ||||||||||||||||||||| ||||||||||||||    
T  261052 gatgaaaaatcaaatgacctataattgcagggatgaaatgcatatttaagcct 261000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 262490 - 262542
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||| | ||||||||| ||||||||||| ||||||||||||||    
T  262490 gatgaaaaatcaaatgacctataattacagggatgaaatgcatatttaagcct 262542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1493 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1493
Description:

Target: scaffold1493; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 644 - 592
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 67  Q
    |||||||||||||| | ||||||||||||| ||||||| ||||||||||||||    
T  644 gatgaaaaatcaaatgacctataattgcagtgatgaaatgcatatttaagcct 592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 73160 - 73109
Alignment:
Q  15 gatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcc 66  Q
    |||||||| ||||| |||| |||||| |||||||||||||||||||||||||    
T  73160 gatgaaaagtcaaatggcccataattacagggatgaaaagcatatttaagcc 73109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University