View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21141_high_10 (Length: 242)
Name: NF21141_high_10
Description: NF21141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21141_high_10 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 41182692 - 41182619
Alignment:
| Q |
169 |
ggacaatagcattaatttgttcagaattagatgtcaccatttgcctatttttattttcgattttcacccttttt |
242 |
Q |
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| T |
41182692 |
ggacaatagcattaatttgttcagaattagatgtcaccatttgcctatttttattttcgattttcacccttttt |
41182619 |
T |
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Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 41182828 - 41182726
Alignment:
| Q |
18 |
acaagtacccttggatgaagtgtaatgactaatgacccacactcagcaaaaacaacagaccctgaaccaaagatttgtactgttaagcatgtaaagggtg |
117 |
Q |
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| T |
41182828 |
acaagtacccttggatgaagtgtaatgactaatgacccacactcagca---------------gaaccaaagatttgtactgttaagcatgtaaagggtg |
41182744 |
T |
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| Q |
118 |
aaacaaactaatccaata |
135 |
Q |
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| T |
41182743 |
aaacaaactaatccaata |
41182726 |
T |
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