View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21141_high_13 (Length: 208)
Name: NF21141_high_13
Description: NF21141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21141_high_13 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 38 - 208
Target Start/End: Complemental strand, 11860564 - 11860394
Alignment:
| Q |
38 |
aaagtgacaatgtttgcaaggaagtgagcttacttatcccacttggcatttgagttagatccaagcacccctctaagtcaagatggttgaggcaactcaa |
137 |
Q |
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| T |
11860564 |
aaagtgacaatgtttgcaaagaagtaagcttatttatcccacttggcatttgagttagatccaagcatccctctaagtcaagatgattgaggcaactcaa |
11860465 |
T |
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| Q |
138 |
atcatccatgtcttttggcaattccttgaggacatgacattgagacagtttcaatgtttgcaagtggataa |
208 |
Q |
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| T |
11860464 |
atcgtccatgtcttttggcaattccttgaggacatgacattgagacagtttcaatgtttgcaagtggataa |
11860394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 38 - 208
Target Start/End: Complemental strand, 11828429 - 11828259
Alignment:
| Q |
38 |
aaagtgacaatgtttgcaaggaagtgagcttacttatcccacttggcatttgagttagatccaagcacccctctaagtcaagatggttgaggcaactcaa |
137 |
Q |
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| T |
11828429 |
aaagtgacaatgtttgcaaagaagtgagcttacttattccacttggcatttgagttagatccaagcatccatctaagtcaagatggttaaggcaactcaa |
11828330 |
T |
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| Q |
138 |
atcatccatgtcttttggcaattccttgaggacatgacattgagacagtttcaatgtttgcaagtggataa |
208 |
Q |
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| T |
11828329 |
atcatccatgtcttttggcaattctttgaggacatgacatcgagacagtttcaacgtttgcaagtggataa |
11828259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 40 - 208
Target Start/End: Complemental strand, 12039327 - 12039159
Alignment:
| Q |
40 |
agtgacaatgtttgcaaggaagtgagcttacttatcccacttggcatttgagttagatccaagcacccctctaagtcaagatggttgaggcaactcaaat |
139 |
Q |
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| T |
12039327 |
agtgacaatgtttgtaaagaagtgagcttatttatcccacttggcatttgagttagatccaagcatccctctaagtcaagatggttgaggcaactcaaat |
12039228 |
T |
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| Q |
140 |
catccatgtcttttggcaattccttgaggacatgacattgagacagtttcaatgtttgcaagtggataa |
208 |
Q |
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| T |
12039227 |
catccatgtcttttggcaattccttgagaaaatgacattgagaaagtttcaacgtttgcaagtggataa |
12039159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 40 - 208
Target Start/End: Original strand, 11901995 - 11902163
Alignment:
| Q |
40 |
agtgacaatgtttgcaaggaagtgagcttacttatcccacttggcatttgagttagatccaagcacccctctaagtcaagatggttgaggcaactcaaat |
139 |
Q |
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| T |
11901995 |
agtgacaatgtttgtaaagaagtgagcttatttataccacttggcatgtgagttagatccaggcatccctcaatgtcaagatggttgaggcaactcaggc |
11902094 |
T |
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| Q |
140 |
catccatgtcttttggcaattccttgaggacatgacattgagacagtttcaatgtttgcaagtggataa |
208 |
Q |
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| T |
11902095 |
catccaagtcttttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataa |
11902163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 38 - 208
Target Start/End: Complemental strand, 11732209 - 11732039
Alignment:
| Q |
38 |
aaagtgacaatgtttgcaaggaagtgagcttacttatcccacttggcatttgagttagatccaagcacccctctaagtcaagatggttgaggcaactcaa |
137 |
Q |
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|||||||||||||||| ||||||||||| ||| |||||| ||||||| ||||||||||||||||| ||||| | || ||||||| |||||| | ||| |
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| T |
11732209 |
aaagtgacaatgtttgtaaggaagtgagtttatctatcccggttggcatgtgagttagatccaagcaaccctcaatgttaagatggctgaggcgagtcag |
11732110 |
T |
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| Q |
138 |
atcatccatgtcttttggcaattccttgaggacatgacattgagacagtttcaatgtttgcaagtggataa |
208 |
Q |
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||| | || |||||||||||||||||||||||||||||| | || |||||||| |||||||| ||||||| |
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| T |
11732109 |
atccttcaagtcttttggcaattccttgaggacatgacagtaggagagtttcaaggtttgcaaatggataa |
11732039 |
T |
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