View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21141_high_5 (Length: 516)
Name: NF21141_high_5
Description: NF21141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21141_high_5 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 52 - 516
Target Start/End: Complemental strand, 11860861 - 11860394
Alignment:
| Q |
52 |
acaacatgtggccatggtacccgacgactaatagcactttcagattctgatgtggctcgagaaaatccataaatttattatcgatgacgacatcgctttc |
151 |
Q |
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||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||| |||||||||||||| ||| |||||| |||||| |
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| T |
11860861 |
acaacatgtggccatggtacccgacaactaatagctctttcagattctgatgtggctcgagacaatcgataaatttattatcaatgtcgacattgctttc |
11860762 |
T |
|
| Q |
152 |
ttcctcctcgt---gatcccatcttagagtcaagaactcgagatgttgtttatttttcaaaaattcatctttggcagcttcctttgatggagagaacttg |
248 |
Q |
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||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
11860761 |
ttcctcctcgtcatgatcccatcttagagtcaagaactcgaggtgttgcttatttttcaaaaaatcatctttagcagcttcctttgatggagagaacttg |
11860662 |
T |
|
| Q |
249 |
acttgttcaagatgagatatttccaagtggcctctcagtttgttaagatctgtgagtgatcttagtcctcccgtgacttgtttcttgctggcaacgaaaa |
348 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11860661 |
acttgttcaagatgagaaatttccaagtggcctctcagattgttaagatctgtgagtgatcttagtcctcccgtgacttgtttcttgctggctacgaaaa |
11860562 |
T |
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| Q |
349 |
gtgacaatgtttgcaaggaagtgagcttacttatcccacttggcatttgagttagatccaagcacccctctaagtcaagatggttgaggcaactcaaatc |
448 |
Q |
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|||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
11860561 |
gtgacaatgtttgcaaagaagtaagcttatttatcccacttggcatttgagttagatccaagcatccctctaagtcaagatgattgaggcaactcaaatc |
11860462 |
T |
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| Q |
449 |
atccatgtcttttggcaattccttgaggacatgacattgagacagtttcaatgtttgcaagtggataa |
516 |
Q |
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| T |
11860461 |
gtccatgtcttttggcaattccttgaggacatgacattgagacagtttcaatgtttgcaagtggataa |
11860394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 153 - 516
Target Start/End: Complemental strand, 11828622 - 11828259
Alignment:
| Q |
153 |
tcctcctcgtgatcccatcttagagtcaagaactcgagatgttgtttatttttcaaaaattcatctttggcagcttcctttgatggagagaacttgactt |
252 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| || |
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| T |
11828622 |
tcctcatcgtgatcccatcttagagtcaagaactcaaggtgttgtttatttttcaaaaaatcatctttagcagcttcttttgatggagagaacttgattt |
11828523 |
T |
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| Q |
253 |
gttcaagatgagatatttccaagtggcctctcagtttgttaagatctgtgagtgatcttagtcctcccgtgacttgtttcttgctggcaacgaaaagtga |
352 |
Q |
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|||| ||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
11828522 |
gttccagatgcataatttccaagtggcccctcagattgttaagatctgtgagtgatcttagtcctcccgtgacttgtttcttgctggctacgaaaagtga |
11828423 |
T |
|
| Q |
353 |
caatgtttgcaaggaagtgagcttacttatcccacttggcatttgagttagatccaagcacccctctaagtcaagatggttgaggcaactcaaatcatcc |
452 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||| |
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| T |
11828422 |
caatgtttgcaaagaagtgagcttacttattccacttggcatttgagttagatccaagcatccatctaagtcaagatggttaaggcaactcaaatcatcc |
11828323 |
T |
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| Q |
453 |
atgtcttttggcaattccttgaggacatgacattgagacagtttcaatgtttgcaagtggataa |
516 |
Q |
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||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
11828322 |
atgtcttttggcaattctttgaggacatgacatcgagacagtttcaacgtttgcaagtggataa |
11828259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 153 - 516
Target Start/End: Complemental strand, 12039522 - 12039159
Alignment:
| Q |
153 |
tcctcctcgtgatcccatcttagagtcaagaactcgagatgttgtttatttttcaaaaattcatctttggcagcttcctttgatggagagaacttgactt |
252 |
Q |
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|||||||| |||||||||||||||||||||||| | || | || ||| |||||||||||||||||||| ||| |||||| ||| | ||||||||||||| |
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| T |
12039522 |
tcctcctcatgatcccatcttagagtcaagaacccaaggtattttttgtttttcaaaaattcatctttagcaatttccttggattgcgagaacttgactt |
12039423 |
T |
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| Q |
253 |
gttcaagatgagatatttccaagtggcctctcagtttgttaagatctgtgagtgatcttagtcctcccgtgacttgtttcttgctggcaacgaaaagtga |
352 |
Q |
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|||| ||||| || ||||||| ||| |||||||||||||| ||||| |||||| |||||||||||| || || | ||||||||| || || || ||||| |
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| T |
12039422 |
gttccagatgcgaaatttccatgtgacctctcagtttgttgagatcggtgagttctcttagtcctcctgtaacgtatttcttgctagctacaaagagtga |
12039323 |
T |
|
| Q |
353 |
caatgtttgcaaggaagtgagcttacttatcccacttggcatttgagttagatccaagcacccctctaagtcaagatggttgaggcaactcaaatcatcc |
452 |
Q |
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||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
12039322 |
caatgtttgtaaagaagtgagcttatttatcccacttggcatttgagttagatccaagcatccctctaagtcaagatggttgaggcaactcaaatcatcc |
12039223 |
T |
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| Q |
453 |
atgtcttttggcaattccttgaggacatgacattgagacagtttcaatgtttgcaagtggataa |
516 |
Q |
| |
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||||||||||||||||||||||| | |||||||||||| |||||||| |||||||||||||||| |
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| T |
12039222 |
atgtcttttggcaattccttgagaaaatgacattgagaaagtttcaacgtttgcaagtggataa |
12039159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 162 - 516
Target Start/End: Original strand, 11901806 - 11902163
Alignment:
| Q |
162 |
tgatcccatcttagagtcaagaactcgagatgttgtttatttttcaaaaattcatctttggcagcttcctttgatggagagaacttgacttgttcaagat |
261 |
Q |
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|||||||||||||||||||| ||||| || |||||||||||||||| ||||||||||| ||||||||||| |||||||||||| |||||||||| |||| |
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| T |
11901806 |
tgatcccatcttagagtcaaaaactcaaggtgttgtttatttttcagaaattcatcttgagcagcttccttagatggagagaacatgacttgttctagat |
11901905 |
T |
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| Q |
262 |
gagatatttccaagtggcctctcagtttgttaagatctgtgagtgatcttagtcctcccgtga---cttgtttcttgctggcaacgaaaagtgacaatgt |
358 |
Q |
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| ||||||||||| |||||||||| ||||||||||| |||||| |||||||||||| |||| |||||||||||||||| || || ||||||||||| |
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| T |
11901906 |
gcgatatttccaaccggcctctcagattgttaagatccgtgagttctcttagtcctccagtgattacttgtttcttgctggccacaaagagtgacaatgt |
11902005 |
T |
|
| Q |
359 |
ttgcaaggaagtgagcttacttatcccacttggcatttgagttagatccaagcacccctctaagtcaagatggttgaggcaactcaaatcatccatgtct |
458 |
Q |
| |
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||| || |||||||||||| |||| ||||||||||| ||||||||||||| ||| ||||| | ||||||||||||||||||||||| |||||| |||| |
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| T |
11902006 |
ttgtaaagaagtgagcttatttataccacttggcatgtgagttagatccaggcatccctcaatgtcaagatggttgaggcaactcaggccatccaagtct |
11902105 |
T |
|
| Q |
459 |
tttggcaattccttgaggacatgacattgagacagtttcaatgtttgcaagtggataa |
516 |
Q |
| |
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||||||||||||||||||| |||||||| || | ||||||||||||||||||||||| |
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| T |
11902106 |
tttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataa |
11902163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 192 - 516
Target Start/End: Complemental strand, 11732366 - 11732039
Alignment:
| Q |
192 |
tgttgtttatttttcaaaaattcatctttggcagcttcctttgatggagagaacttgacttgttcaagatgagatatttccaagtggcctctcagtttgt |
291 |
Q |
| |
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|||||||||||||||| |||||||||||| || ||||| || |||||||||||||||||||| || ||||| | ||||||| | | | | || |||| |
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| T |
11732366 |
tgttgtttatttttcacaaattcatctttagccgcttcgttggatggagagaacttgacttgctccagatgcaaaatttccagtttgtccttgaggttgt |
11732267 |
T |
|
| Q |
292 |
taagatctgtgagtgatcttagtcctcccgtgact---tgtttcttgctggcaacgaaaagtgacaatgtttgcaaggaagtgagcttacttatcccact |
388 |
Q |
| |
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| |||| ||||||| ||||||||||| ||| | |||||||||||||| |||||||||||||||||||| ||||||||||| ||| |||||| | |
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| T |
11732266 |
tgagatttgtgagttcccttagtcctccggtgtcagcatgtttcttgctggccacgaaaagtgacaatgtttgtaaggaagtgagtttatctatcccggt |
11732167 |
T |
|
| Q |
389 |
tggcatttgagttagatccaagcacccctctaagtcaagatggttgaggcaactcaaatcatccatgtcttttggcaattccttgaggacatgacattga |
488 |
Q |
| |
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|||||| ||||||||||||||||| ||||| | || ||||||| |||||| | ||| ||| | || |||||||||||||||||||||||||||||| | |
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| T |
11732166 |
tggcatgtgagttagatccaagcaaccctcaatgttaagatggctgaggcgagtcagatccttcaagtcttttggcaattccttgaggacatgacagtag |
11732067 |
T |
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| Q |
489 |
gacagtttcaatgtttgcaagtggataa |
516 |
Q |
| |
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|| |||||||| |||||||| ||||||| |
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| T |
11732066 |
gagagtttcaaggtttgcaaatggataa |
11732039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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