View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21141_low_1 (Length: 665)

Name: NF21141_low_1
Description: NF21141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21141_low_1
NF21141_low_1
[»] chr2 (11 HSPs)
chr2 (22-156)||(28220359-28220496)
chr2 (165-289)||(28218023-28218147)
chr2 (170-273)||(8178731-8178834)
chr2 (170-236)||(45328894-45328960)
chr2 (29-75)||(32309286-32309332)
chr2 (29-75)||(32565503-32565549)
chr2 (29-75)||(32799734-32799780)
chr2 (29-75)||(32806688-32806734)
chr2 (29-75)||(32815125-32815171)
chr2 (178-237)||(16291553-16291612)
chr2 (26-72)||(28215732-28215778)
[»] chr4 (3 HSPs)
chr4 (165-294)||(48624748-48624877)
chr4 (170-216)||(27452402-27452448)
chr4 (187-220)||(16001023-16001056)
[»] chr5 (4 HSPs)
chr5 (170-294)||(25924-26048)
chr5 (170-294)||(1289747-1289873)
chr5 (170-273)||(7090193-7090296)
chr5 (171-269)||(21913203-21913301)
[»] chr3 (4 HSPs)
chr3 (170-294)||(51449923-51450047)
chr3 (170-294)||(52137129-52137253)
chr3 (202-294)||(3367764-3367855)
chr3 (166-237)||(9257038-9257109)
[»] chr8 (3 HSPs)
chr8 (170-236)||(15217515-15217581)
chr8 (176-269)||(21239700-21239793)
chr8 (173-240)||(13587653-13587721)
[»] chr1 (1 HSPs)
chr1 (170-273)||(49349652-49349755)
[»] chr6 (3 HSPs)
chr6 (170-294)||(6080387-6080511)
chr6 (29-75)||(301432-301478)
chr6 (170-236)||(20429914-20429980)
[»] scaffold0001 (1 HSPs)
scaffold0001 (170-235)||(440839-440904)


Alignment Details
Target: chr2 (Bit Score: 106; Significance: 1e-52; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 22 - 156
Target Start/End: Complemental strand, 28220496 - 28220359
Alignment:
Q  22 gaaaccttatagaaattatattgaagattggaaccatctttgattctttc----attggatggtgatttcacggtcaacttcacggagccaaaaatcaat 117  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    |||||||||||||||||||||||||||||||||||| |||||||||    
T  28220496 gaaaccttatagaaattatattgaagattggaaccatctctgattctttctttcattggatggtgatttcacggtcaacttcacggagcc-aaaatcaat 28220398  T
Q  118 cttcccgaagttgaatagagaagcttggacaatggtaac 156  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  28220397 cttcccgaagttgaatagagaagcttggacgatggtaac 28220359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 165 - 289
Target Start/End: Complemental strand, 28218147 - 28218023
Alignment:
Q  165 gtttcgatcttactataactaatacgtgttttaggaaaagagaggagcatcttatcgcatataagagtggggtgacttcttctcagatatattttcttct 264  Q
    |||| |||| |||||||| |||||| ||||||||||||||||| || ||||||||| |||  |||| ||||||||||| |||||||||| ||||  ||||    
T  28218147 gttttgatcctactataattaatacatgttttaggaaaagagatgaacatcttatcacatgcaagaatggggtgacttattctcagatagatttctttct 28218048  T
Q  265 tattaggaagtcatacaagaagatt 289  Q
    ||||||||| ||| || ||||||||    
T  28218047 tattaggaaatcaaacgagaagatt 28218023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 273
Target Start/End: Original strand, 8178731 - 8178834
Alignment:
Q  170 gatcttactataactaatacgtgttttaggaaaagagaggagcatcttatcgcatataagagtggggtgacttcttctcagatatattttcttcttatta 269  Q
    |||||||||||| ||||||| ||||| ||||||| |||||||||| ||||| | || |||||||||||  | | |||||||||| ||||  |||||||||    
T  8178731 gatcttactatagctaatacttgtttcaggaaaatagaggagcattttatcacttacaagagtggggtctcatgttctcagatagatttctttcttatta 8178830  T
Q  270 ggaa 273  Q
    ||||    
T  8178831 ggaa 8178834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 170 - 236
Target Start/End: Complemental strand, 45328960 - 45328894
Alignment:
Q  170 gatcttactataactaatacgtgttttaggaaaagagaggagcatcttatcgcatataagagtgggg 236  Q
    |||||||||||  |||||||||||||||||||||||||||||||||| ||| | || ||||||||||    
T  45328960 gatcttactatcgctaatacgtgttttaggaaaagagaggagcatctcatcacttacaagagtgggg 45328894  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 32309332 - 32309286
Alignment:
Q  29 tatagaaattatattgaagattggaaccatctttgattctttcattg 75  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||    
T  32309332 tatagaaattatattgaagattggaaccatctctgattctttgattg 32309286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 32565503 - 32565549
Alignment:
Q  29 tatagaaattatattgaagattggaaccatctttgattctttcattg 75  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||    
T  32565503 tatagaaattatattgaagattggaaccatctctgattctttgattg 32565549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 32799734 - 32799780
Alignment:
Q  29 tatagaaattatattgaagattggaaccatctttgattctttcattg 75  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||    
T  32799734 tatagaaattatattgaagattggaaccatctctgattctttgattg 32799780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 32806688 - 32806734
Alignment:
Q  29 tatagaaattatattgaagattggaaccatctttgattctttcattg 75  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||    
T  32806688 tatagaaattatattgaagattggaaccatctctgattctttgattg 32806734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 32815125 - 32815171
Alignment:
Q  29 tatagaaattatattgaagattggaaccatctttgattctttcattg 75  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||    
T  32815125 tatagaaattatattgaagattggaaccatctctgattctttgattg 32815171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 178 - 237
Target Start/End: Original strand, 16291553 - 16291612
Alignment:
Q  178 tataactaatacgtgttttaggaaaagagaggagcatcttatcgcatataagagtggggt 237  Q
    |||| ||||||| ||||| |||||||||||||||||||||||| | || |||||||||||    
T  16291553 tatagctaatacttgtttcaggaaaagagaggagcatcttatcacttacaagagtggggt 16291612  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 28215732 - 28215778
Alignment:
Q  26 ccttatagaaattatattgaagattggaaccatctttgattctttca 72  Q
    ||||||||||||||||| ||||||||||||||||| |||| ||||||    
T  28215732 ccttatagaaattatatcgaagattggaaccatctctgatactttca 28215778  T

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Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 165 - 294
Target Start/End: Complemental strand, 48624877 - 48624748
Alignment:
Q  165 gtttcgatcttactataactaatacgtgttttaggaaaagagaggagcatcttatcgcatataagagtggggtgacttcttctcagatatattttcttct 264  Q
    |||| |||||||||||| ||||||| ||||| |||||||||||||||||||| ||| | || |||||||||||  | | |||||||||| ||||  ||||    
T  48624877 gttttgatcttactatagctaatacttgtttcaggaaaagagaggagcatctaatcacttacaagagtggggtctcatgttctcagatagatttctttct 48624778  T
Q  265 tattaggaagtcatacaagaagattggttt 294  Q
    ||||||||| ||  ||| ||||||| ||||    
T  48624777 tattaggaaatctgacaggaagatttgttt 48624748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 27452448 - 27452402
Alignment:
Q  170 gatcttactataactaatacgtgttttaggaaaagagaggagcatct 216  Q
    |||||||||||| ||||||| ||||||||||||||||| ||||||||    
T  27452448 gatcttactatagctaatacatgttttaggaaaagagatgagcatct 27452402  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 16001023 - 16001056
Alignment:
Q  187 tacgtgttttaggaaaagagaggagcatcttatc 220  Q
    ||||||||||||||||||||||||||||||||||    
T  16001023 tacgtgttttaggaaaagagaggagcatcttatc 16001056  T

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Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 170 - 294
Target Start/End: Original strand, 25924 - 26048
Alignment:
Q  170 gatcttactataactaatacgtgttttaggaaaagagaggagcatcttatcgcatataagagtggggtgacttcttctcagatatattttcttcttatta 269  Q
    ||||||| |||| |||||||||||||| |||| |||||||||||||||||| | || ||||||| | | |  | |||||||||| ||||| |||||||||    
T  25924 gatcttattatagctaatacgtgtttttggaacagagaggagcatcttatcacttacaagagtgcgataatatgttctcagatagatttttttcttatta 26023  T
Q  270 ggaagtcatacaagaagattggttt 294  Q
    |||| |||||||  |||||| ||||    
T  26024 ggaattcatacataaagatttgttt 26048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 170 - 294
Target Start/End: Complemental strand, 1289873 - 1289747
Alignment:
Q  170 gatcttactataactaatacgtgttttaggaaaagagaggagcatcttatcgcatataagagtggggtgacttcttctcagatatat-tttc-ttcttat 267  Q
    |||||||||||| ||||||| ||||| |||||||||||||||||||||||| | || ||||||| |||  | | ||||||||||||| |||| |||||||    
T  1289873 gatcttactatagctaatacttgtttcaggaaaagagaggagcatcttatcacttacaagagtgaggtctcatgttctcagatatatatttctttcttat 1289774  T
Q  268 taggaagtcatacaagaagattggttt 294  Q
    |||||| ||  ||| ||||||| ||||    
T  1289773 taggaaatccgacaggaagatttgttt 1289747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 273
Target Start/End: Original strand, 7090193 - 7090296
Alignment:
Q  170 gatcttactataactaatacgtgttttaggaaaagagaggagcatcttatcgcatataagagtggggtgacttcttctcagatatattttcttcttatta 269  Q
    ||||||||| || |||||||||||| || |||||||| ||||||||||||| |||| ||||| ||| | || | |||||||||  ||||  |||||||||    
T  7090193 gatcttactgtagctaatacgtgttctatgaaaagagtggagcatcttatcacatacaagagcgggttaacatgttctcagatgaatttctttcttatta 7090292  T
Q  270 ggaa 273  Q
    ||||    
T  7090293 ggaa 7090296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 171 - 269
Target Start/End: Original strand, 21913203 - 21913301
Alignment:
Q  171 atcttactataactaatacgtgttttaggaaaagagaggagcatcttatcgcatataagagtggggtgacttcttctcagatatattttcttcttatta 269  Q
    ||||||||||| |||||| ||| |||| | |||||| ||| |||||||||  |||||| ||||||||| | | ||| |||||| ||||  |||||||||    
T  21913203 atcttactatagctaataagtgctttaagtaaagagtggaacatcttatcatatataatagtggggtggcatgttcacagataaatttctttcttatta 21913301  T

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Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 170 - 294
Target Start/End: Complemental strand, 51450047 - 51449923
Alignment:
Q  170 gatcttactataactaatacgtgttttaggaaaagagaggagcatcttatcgcatataagagtggggtgacttcttctcagatatattttcttcttatta 269  Q
    |||||||||||| ||||||| ||||| ||||||| |||||||||||||||| | || |||||||||||  | | |||||||||| ||||  |||||||||    
T  51450047 gatcttactatagctaatacttgtttcaggaaaatagaggagcatcttatcacttacaagagtggggtctcatgttctcagatagatttctttcttatta 51449948  T
Q  270 ggaagtcatacaagaagattggttt 294  Q
    |||| ||  ||| ||||||| ||||    
T  51449947 ggaaatccgacaggaagatttgttt 51449923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 170 - 294
Target Start/End: Original strand, 52137129 - 52137253
Alignment:
Q  170 gatcttactataactaatacgtgttttaggaaaagagaggagcatcttatcgcatataagagtggggtgacttcttctcagatatattttcttcttatta 269  Q
    |||||||||||| ||||||| ||||| ||||||||||||||||||| |||| | |  |||||||||||  | | ||||||| || ||||  |||||||||    
T  52137129 gatcttactatagctaatacttgtttcaggaaaagagaggagcatcctatcactttcaagagtggggtctcatgttctcaggtagatttctttcttatta 52137228  T
Q  270 ggaagtcatacaagaagattggttt 294  Q
    |||| ||  ||| ||||||| ||||    
T  52137229 ggaaatccgacaggaagatttgttt 52137253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 294
Target Start/End: Original strand, 3367764 - 3367855
Alignment:
Q  202 aagagaggagcatcttatcgcatataagagtggggtgacttcttctcagatatattttcttcttattaggaagtcatacaagaagattggttt 294  Q
    |||||||||||||||||||||||| ||||||| |||||| | |||| ||||| ||||  ||||||||| ||||||  ||| ||||||| ||||    
T  3367764 aagagaggagcatcttatcgcatacaagagtgcggtgacatgttct-agatagatttctttcttattaagaagtctgacatgaagatttgttt 3367855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 237
Target Start/End: Original strand, 9257038 - 9257109
Alignment:
Q  166 tttcgatcttactataactaatacgtgttttaggaaaagagaggagcatcttatcgcatataagagtggggt 237  Q
    ||||||||||||  || ||||||| |||||||| |||||||| |||||| ||||| | || |||||||||||    
T  9257038 tttcgatcttaccgtagctaatacatgttttagaaaaagagatgagcattttatcacttacaagagtggggt 9257109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 170 - 236
Target Start/End: Complemental strand, 15217581 - 15217515
Alignment:
Q  170 gatcttactataactaatacgtgttttaggaaaagagaggagcatcttatcgcatataagagtgggg 236  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||| | || ||||||||||    
T  15217581 gatcttactatagctaatacgtgttttaggaaaagagaggagcatctcatcacttacaagagtgggg 15217515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 176 - 269
Target Start/End: Complemental strand, 21239793 - 21239700
Alignment:
Q  176 actataactaatacgtgttttaggaaaagagaggagcatcttatcgcatataagagtggggtgacttcttctcagatatattttcttcttatta 269  Q
    |||||| |||||| ||||||||| |||||||| |||||||||||| | || |||| | ||||||| | ||||||||||||| || || ||||||    
T  21239793 actatagctaatatgtgttttagaaaaagagatgagcatcttatcacttacaagaattgggtgacatgttctcagatatatattttttttatta 21239700  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 13587653 - 13587721
Alignment:
Q  173 cttactataactaatacgtgtttt-aggaaaagagaggagcatcttatcgcatataagagtggggtgac 240  Q
    ||||||||| ||||||| | |||| || ||||||||||||||||||||| | || ||||| ||||||||    
T  13587653 cttactatagctaatacatttttttagaaaaagagaggagcatcttatcacttacaagagaggggtgac 13587721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 273
Target Start/End: Complemental strand, 49349755 - 49349652
Alignment:
Q  170 gatcttactataactaatacgtgttttaggaaaagagaggagcatcttatcgcatataagagtggggtgacttcttctcagatatattttcttcttatta 269  Q
    |||||||||||| ||||||| ||||| ||||||| ||| |||||||||||| | || |||||||||||  | | |||||||||| ||||  |||||||||    
T  49349755 gatcttactatagctaatacttgtttcaggaaaatagatgagcatcttatcacttacaagagtggggtctcatgttctcagatagatttctttcttatta 49349656  T
Q  270 ggaa 273  Q
    ||||    
T  49349655 ggaa 49349652  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 170 - 294
Target Start/End: Original strand, 6080387 - 6080511
Alignment:
Q  170 gatcttactataactaatacgtgttttaggaaaagagaggagcatcttatcgcatataagagtggggtgacttcttctcagatatattttcttcttatta 269  Q
    |||||||||||| ||||||| |||||  ||||||||||||||||||||||| | || ||||||| |||  | | |||||| ||| ||||  |||||||||    
T  6080387 gatcttactatagctaatacttgtttcgggaaaagagaggagcatcttatcacttacaagagtgaggtctcatgttctcaaatagatttatttcttatta 6080486  T
Q  270 ggaagtcatacaagaagattggttt 294  Q
    |||| ||  ||| ||||||| ||||    
T  6080487 ggaaatccgacaggaagatttgttt 6080511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 301478 - 301432
Alignment:
Q  29 tatagaaattatattgaagattggaaccatctttgattctttcattg 75  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||    
T  301478 tatagaaattatattgaagattggaaccatctctgattctttgattg 301432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 236
Target Start/End: Complemental strand, 20429980 - 20429914
Alignment:
Q  170 gatcttactataactaatacgtgttttaggaaaagagaggagcatcttatcgcatataagagtgggg 236  Q
    ||||||||||||  ||||||||| ||||||||||||||||| ||||| ||| | |||||||||||||    
T  20429980 gatcttactatagttaatacgtgctttaggaaaagagaggaccatctcatcacttataagagtgggg 20429914  T

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Target: scaffold0001 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 235
Target Start/End: Original strand, 440839 - 440904
Alignment:
Q  170 gatcttactataactaatacgtgttttaggaaaagagaggagcatcttatcgcatataagagtggg 235  Q
    |||||||||||   |||||||| |||||||||||||||||||||||| ||| | || |||||||||    
T  440839 gatcttactatcgttaatacgtattttaggaaaagagaggagcatctcatcacttacaagagtggg 440904  T

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