View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21141_low_10 (Length: 312)
Name: NF21141_low_10
Description: NF21141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21141_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 12 - 296
Target Start/End: Complemental strand, 38252962 - 38252678
Alignment:
| Q |
12 |
aagaatataattgaacttcggacacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggt |
111 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38252962 |
aagaaaataattgaacttcggacacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggt |
38252863 |
T |
|
| Q |
112 |
tcagggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38252862 |
tcagggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaa |
38252763 |
T |
|
| Q |
212 |
aagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactgccataattttacatgtatct |
296 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38252762 |
aagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactgccataattttacatgtatct |
38252678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 12 - 296
Target Start/End: Original strand, 43156580 - 43156864
Alignment:
| Q |
12 |
aagaatataattgaacttcggacacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggt |
111 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43156580 |
aagaaaataattgaacttcggacacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggt |
43156679 |
T |
|
| Q |
112 |
tcagggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43156680 |
tcagggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaa |
43156779 |
T |
|
| Q |
212 |
aagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactgccataattttacatgtatct |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43156780 |
aagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactgccataattttacatgtatct |
43156864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 12 - 296
Target Start/End: Original strand, 11473904 - 11474188
Alignment:
| Q |
12 |
aagaatataattgaacttcggacacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggt |
111 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11473904 |
aagaaaataattgaacttcggacacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggt |
11474003 |
T |
|
| Q |
112 |
tcagggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11474004 |
tcagggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaa |
11474103 |
T |
|
| Q |
212 |
aagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactgccataattttacatgtatct |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11474104 |
aagttcacaggtatatgagttgttatttaaagtacttgttttaattttacttgttttggtgactgccataattttacatgtatct |
11474188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 12 - 296
Target Start/End: Complemental strand, 28246132 - 28245863
Alignment:
| Q |
12 |
aagaatataattgaacttcggacacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggt |
111 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28246132 |
aagaaaataattgaacttcgggcacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggt |
28246033 |
T |
|
| Q |
112 |
tcagggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaa |
211 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
28246032 |
tcagggtacaacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcg---------------cgctccacctaaagaaaa |
28245948 |
T |
|
| Q |
212 |
aagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactgccataattttacatgtatct |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28245947 |
aagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactgccataattttacatgtatct |
28245863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 49 - 273
Target Start/End: Complemental strand, 50019678 - 50019454
Alignment:
| Q |
49 |
ataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggttcagggtacgacccggttcaaagcgaattaagcgaca |
148 |
Q |
| |
|
|||||||||||||||||| |||| ||||| ||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50019678 |
ataacggtgataatggtggtcgttcagaaattgtgagttcagatgttctgcaagcaaaggggttcagggtacgacccggttcaaagcgaattaagcgaca |
50019579 |
T |
|
| Q |
149 |
caaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtactt |
248 |
Q |
| |
|
|||||||| ||||||||| ||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||| |
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|
| T |
50019578 |
caaaagttttctggaaaaccagcaaagtcgcgctacatctagttgcgctccacgtaaagaaaaaagttcacaggtatatgagttggtatttagagtactt |
50019479 |
T |
|
| Q |
249 |
gttttagttttacttgttttggtga |
273 |
Q |
| |
|
|||||| |||||||||||||||||| |
|
|
| T |
50019478 |
gttttaattttacttgttttggtga |
50019454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 12 - 296
Target Start/End: Complemental strand, 19307824 - 19307540
Alignment:
| Q |
12 |
aagaatataattgaacttcggacacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggt |
111 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19307824 |
aagaaaataattgaacttcgggcacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggt |
19307725 |
T |
|
| Q |
112 |
tcagggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaa |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19307724 |
tcagggtacgacccggttcaaagcgaattaagcgacacaaaagttgtttggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaa |
19307625 |
T |
|
| Q |
212 |
aagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactgccataattttacatgtatct |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19307624 |
aagttcacaggtatatgagttgttatttaaagtacttgttttatttttacttgttttggtgactgccataattttacatgtatct |
19307540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 10124152 - 10124075
Alignment:
| Q |
12 |
aagaatataattgaacttcggacacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttg |
89 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10124152 |
aagaaaataattgaacttcgggcacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttg |
10124075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 12 - 296
Target Start/End: Original strand, 25382017 - 25382301
Alignment:
| Q |
12 |
aagaatataattgaacttcggacacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggt |
111 |
Q |
| |
|
||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| | || |||||||||||||||||| |
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|
| T |
25382017 |
aagaaaataattgaatttcgggcacaagctatggacaataacggtgataatggtgctcgtccagaaattgtgagttcgaatgttatgcaagcaaaggggt |
25382116 |
T |
|
| Q |
112 |
tcagggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaa |
211 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
25382117 |
tcaaggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctagccgcgctccacctaaagaaaa |
25382216 |
T |
|
| Q |
212 |
aagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactgccataattttacatgtatct |
296 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25382217 |
aagttcacaggtatatgagttggtatttaaagtacttgttttaattttacttgttttggtgactgccataattttacatgtatct |
25382301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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