View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21141_low_13 (Length: 238)
Name: NF21141_low_13
Description: NF21141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21141_low_13 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 26 - 238
Target Start/End: Original strand, 8527429 - 8527645
Alignment:
| Q |
26 |
gttttgatcttaaaatcaacagctatgaatgaaagaaactacattaattaaatcatatgaaaactcaaatcaagtaaaagcaacaaagctaaggaaggag |
125 |
Q |
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| T |
8527429 |
gttttgatcttaaaatcaacagctatgaatgaaagaaactacattaattaaatcatatgaaaactcaaatcaagtaaaagcaacaaagctaaggaaggag |
8527528 |
T |
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| Q |
126 |
agcaaaattggaatagtttgttaattttaatctagttttaatctcttcccacctacatgttcgttttcaggcta----atatcaaacaactgctcagcct |
221 |
Q |
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| T |
8527529 |
agcaaaattggaatagtttgttaattttaatctagttttaatctcttcccacctacatgttcgttttcaggctaatatatatcaaacaactgctcagcct |
8527628 |
T |
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| Q |
222 |
cattattcgtcttattc |
238 |
Q |
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| T |
8527629 |
cattattcgtcttattc |
8527645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 73 - 160
Target Start/End: Original strand, 8627299 - 8627386
Alignment:
| Q |
73 |
ttaaatcatatgaaaactcaaatcaagtaaaagcaacaaagctaaggaaggagagcaaaattggaatagtttgttaattttaatctag |
160 |
Q |
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| T |
8627299 |
ttaaattatatgaaaactccaatcaagtaaaagcaacaaagctaaggaaagagagcataattggagtagttttttagtttcaatctag |
8627386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 8632505 - 8632569
Alignment:
| Q |
86 |
aaactcaaatcaagtaaaagcaacaaagctaaggaaggagagcaaaattggaatagtttgttaat |
150 |
Q |
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| T |
8632505 |
aaactcacatcaaataaaagcaacaaaggtaaagaaggaaagcataattggaatagtttgttaat |
8632569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 41439907 - 41439964
Alignment:
| Q |
72 |
attaaatcatatgaaaactcaaatcaagtaaaagcaacaaagctaaggaaggagagca |
129 |
Q |
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| T |
41439907 |
attagatcatatgaaaactcaaatcagataaaagcaacatagctaaggaatgagagca |
41439964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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