View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21141_low_14 (Length: 213)

Name: NF21141_low_14
Description: NF21141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21141_low_14
NF21141_low_14
[»] chr1 (5 HSPs)
chr1 (20-163)||(4367385-4367528)
chr1 (29-125)||(4017592-4017688)
chr1 (29-125)||(10218126-10218222)
chr1 (29-96)||(4015774-4015841)
chr1 (29-95)||(21897356-21897422)
[»] chr7 (9 HSPs)
chr7 (29-166)||(29105851-29105988)
chr7 (29-127)||(29480368-29480466)
chr7 (20-107)||(29922925-29923012)
chr7 (29-160)||(29074123-29074253)
chr7 (29-83)||(47479667-47479721)
chr7 (30-123)||(29436502-29436595)
chr7 (29-110)||(29446534-29446615)
chr7 (30-107)||(29454982-29455059)
chr7 (30-127)||(29477246-29477343)


Alignment Details
Target: chr1 (Bit Score: 144; Significance: 7e-76; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 20 - 163
Target Start/End: Original strand, 4367385 - 4367528
Alignment:
Q  20 agatgaggtttttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatcatcagagaggac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4367385 agatgaggtttttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatcatcagagaggac 4367484  T
Q  120 caccggcgataaagccatagacgtagctgattggatattcatct 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  4367485 caccggcgataaagccatagacgtagctgattggatattcatct 4367528  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 125
Target Start/End: Original strand, 4017592 - 4017688
Alignment:
Q  29 ttttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatcatcagagaggaccaccgg 125  Q
    |||||||||| ||||| |||||||| ||| | |||||| |||| ||||| |||||||||||||||||  | |||||||| || ||||||||| ||||    
T  4017592 ttttccaagatttactcacacacctaaattggagaagagatttcacgggaagaaacgaaagtacctcgacgatgagatcctcggagaggaccgccgg 4017688  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 125
Target Start/End: Complemental strand, 10218222 - 10218126
Alignment:
Q  29 ttttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatcatcagagaggaccaccgg 125  Q
    |||||||||| ||||| ||||||||||| | || |||| |||| || || ||||| ||||||||||| |||| |||||| || ||||||||| ||||    
T  10218222 ttttccaagatttactcacacacctgaagcaaacaagagatttcaccggaagaaaggaaagtacctcggcaacgagatcttcggagaggaccgccgg 10218126  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 4015774 - 4015841
Alignment:
Q  29 ttttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctca 96  Q
    |||||||||||||||| |||||||||||||||| |||| || | || || ||||| ||||||||||||    
T  4015774 ttttccaagacttactcacacacctgaatcgaacaagagatctcactggaagaaatgaaagtacctca 4015841  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 21897356 - 21897422
Alignment:
Q  29 ttttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctc 95  Q
    |||||||| ||||||| ||| |||||||||||| |||| || |||| || |||||||||||||||||    
T  21897356 ttttccaacacttacttacagacctgaatcgaataagagatctaacaggaagaaacgaaagtacctc 21897422  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 166
Target Start/End: Complemental strand, 29105988 - 29105851
Alignment:
Q  29 ttttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatcatcagagaggaccaccggcga 128  Q
    ||||||||||||| |||||| |||| |||||||||||| || ||||||| || || ||||| || || || ||||||||||| | ||| ||||||| |||    
T  29105988 ttttccaagacttgctgacagacctaaatcgaagaagaaatataacgggaaggaaggaaagaacttctgcgatgagatcatcggggagaaccaccgacga 29105889  T
Q  129 taaagccatagacgtagctgattggatattcatcttga 166  Q
     | |||||||||| | || ||||| |||||||| ||||    
T  29105888 cagagccatagactttgccgattgtatattcatattga 29105851  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 127
Target Start/End: Original strand, 29480368 - 29480466
Alignment:
Q  29 ttttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatcatcagagaggaccaccggcg 127  Q
    ||||||||||||||| ||||||| ||||||||| | || |||| ||||| || || ||||||| ||| |  |||||||||||||  |||||||||||||    
T  29480368 ttttccaagacttacagacacacttgaatcgaacaggagatttgacgggaaggaaggaaagtaactctgtgatgagatcatcaggaaggaccaccggcg 29480466  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 29922925 - 29923012
Alignment:
Q  20 agatgaggtttttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatc 107  Q
    |||||||  |||||||||||||||| |||| | ||||||||||||||  ||| || || ||||| |||||||| ||||| ||||||||    
T  29922925 agatgagtattttccaagacttactaacactcttgaatcgaagaagaggtttcaccggaagaaaggaaagtacttcagcgatgagatc 29923012  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 160
Target Start/End: Complemental strand, 29074253 - 29074123
Alignment:
Q  29 ttttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatcatcagagaggaccaccggcga 128  Q
    ||||||||||||| |||||| |||| |||||||||||| || ||| ||| || || ||||| || || || ||||||||||| |  || ||||||| |||    
T  29074253 ttttccaagacttgctgacagacctaaatcgaagaagaaatataa-gggaaggaaggaaagaacttctgcgatgagatcatcgggaagaaccaccgacga 29074155  T
Q  129 taaagccatagacgtagctgattggatattca 160  Q
     | |||||||||| | || ||||| |||||||    
T  29074154 cagagccatagactttgccgattgtatattca 29074123  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 47479667 - 47479721
Alignment:
Q  29 ttttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaa 83  Q
    |||||||||||||||| ||||| |||||||||| |||| ||| |||||| |||||    
T  47479667 ttttccaagacttacttacacaactgaatcgaataagaaattcaacgggaagaaa 47479721  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 29436502 - 29436595
Alignment:
Q  30 tttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatcatcagagaggaccacc 123  Q
    ||||||||||| ||||||||| || ||| ||||||   |||||||||| ||||||| ||||| ||| |  |||||||| |||| ||| ||||||    
T  29436502 tttccaagactcactgacacatctaaattgaagaatggatttaacgggaagaaacggaagtatctcggtgatgagatcgtcagggagaaccacc 29436595  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 29446534 - 29446615
Alignment:
Q  29 ttttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatcatc 110  Q
    |||||||| ||||| |||||||| ||||||||| |||| |||| ||||| || || ||||  ||||| || |||||||||||    
T  29446534 ttttccaatacttattgacacacttgaatcgaacaagagatttgacgggaaggaaggaaaaaacctcggcgatgagatcatc 29446615  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 29454982 - 29455059
Alignment:
Q  30 tttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatc 107  Q
    ||||||| ||||| | || ||||||||| ||||||||  ||| ||||| ||| | |||||||||||||| ||||||||    
T  29454982 tttccaatacttattcacgcacctgaattgaagaagaattttgacgggaagataagaaagtacctcagcgatgagatc 29455059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 127
Target Start/End: Original strand, 29477246 - 29477343
Alignment:
Q  30 tttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatcatcagagaggaccaccggcg 127  Q
    |||||||||||| || |||||  ||| ||||| |||| |||| ||||| || || ||||||| ||| || |||||||| ||||  |||||||||||||    
T  29477246 tttccaagacttgctaacacatttgagtcgaacaagagatttgacgggaaggaaggaaagtaactctgcgatgagatcgtcaggaaggaccaccggcg 29477343  T

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