View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21141_low_6 (Length: 515)
Name: NF21141_low_6
Description: NF21141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21141_low_6 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Complemental strand, 11860911 - 11860394
Alignment:
| Q |
1 |
gtcgttcaaggtaaacttaacaaggaattgaagtgaagtgagccaattagacaacatgtggccatggtacccgacgactaatagcactttcagattctga |
100 |
Q |
| |
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||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
11860911 |
gtcgttcaaggtaaatttaccaaggaattgaagtgaagcgagccaattagacaacatgtggccatggtacccgacaactaatagctctttcagattctga |
11860812 |
T |
|
| Q |
101 |
tgtggctcgagaaaatccataaatttattatcgatgacgacatcgctttcttcctcctcgt---gatcccatcttagagtcaagaactcgagatgttgtt |
197 |
Q |
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|||||||||||| |||| |||||||||||||| ||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||| | |
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| T |
11860811 |
tgtggctcgagacaatcgataaatttattatcaatgtcgacattgctttcttcctcctcgtcatgatcccatcttagagtcaagaactcgaggtgttgct |
11860712 |
T |
|
| Q |
198 |
tatttttcaaaaattcatctttggcagcttcctttgatggagagaacttgacttgttcaagatgagatatttccaagtggcctctcagtttgttaagatc |
297 |
Q |
| |
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||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
11860711 |
tatttttcaaaaaatcatctttagcagcttcctttgatggagagaacttgacttgttcaagatgagaaatttccaagtggcctctcagattgttaagatc |
11860612 |
T |
|
| Q |
298 |
tgtgagtgatcttagtcctcccgtgacttgtttcttgctggcaacgaaaagtgacaatgtttgcaaggaagtgagcttacttatcccacttggcatttga |
397 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||| |
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| T |
11860611 |
tgtgagtgatcttagtcctcccgtgacttgtttcttgctggctacgaaaagtgacaatgtttgcaaagaagtaagcttatttatcccacttggcatttga |
11860512 |
T |
|
| Q |
398 |
gttagatccaagcacccctctaagtcaagatggttgaggcaactcaaatcatccatgtcttttggcaattccttgaggacatgacattgagacagtttca |
497 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11860511 |
gttagatccaagcatccctctaagtcaagatgattgaggcaactcaaatcgtccatgtcttttggcaattccttgaggacatgacattgagacagtttca |
11860412 |
T |
|
| Q |
498 |
atgtttgcaagtggataa |
515 |
Q |
| |
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|||||||||||||||||| |
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| T |
11860411 |
atgtttgcaagtggataa |
11860394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 5 - 515
Target Start/End: Complemental strand, 11828775 - 11828259
Alignment:
| Q |
5 |
ttcaaggtaaacttaacaaggaattgaagtgaagtgagccaattagacaacatgtggccatggtacccgacgactaatagcactttcagattctgatgtg |
104 |
Q |
| |
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||||||||||||||||||||| |||||||||||| |||||| |||||||| |||| || | ||||||||| ||||||||||||| |||||| |||||| |
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| T |
11828775 |
ttcaaggtaaacttaacaaggcattgaagtgaagcgagccagttagacaatgtgtgaccgttgtacccgacaactaatagcacttgcagatttggatgtg |
11828676 |
T |
|
| Q |
105 |
gctcgagaaaatccataaatttattatcgatgacgacatcgctttcttcctcctc------gtgatcccatcttagagtcaagaactcgagatgttgttt |
198 |
Q |
| |
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||| |||| |||| | |||| || || | |||||| ||||||||| ||||| ||||||||||||||||||||||||||| || |||||||| |
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| T |
11828675 |
gctggagacaatcaagcgatttcttgtctttctcgacattgctttcttcgtcctcctcatcgtgatcccatcttagagtcaagaactcaaggtgttgttt |
11828576 |
T |
|
| Q |
199 |
atttttcaaaaattcatctttggcagcttcctttgatggagagaacttgacttgttcaagatgagatatttccaagtggcctctcagtttgttaagatct |
298 |
Q |
| |
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|||||||||||| |||||||| |||||||| ||||||||||||||||||| |||||| ||||| |||||||||||||| ||||| |||||||||||| |
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| T |
11828575 |
atttttcaaaaaatcatctttagcagcttcttttgatggagagaacttgatttgttccagatgcataatttccaagtggcccctcagattgttaagatct |
11828476 |
T |
|
| Q |
299 |
gtgagtgatcttagtcctcccgtgacttgtttcttgctggcaacgaaaagtgacaatgtttgcaaggaagtgagcttacttatcccacttggcatttgag |
398 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
11828475 |
gtgagtgatcttagtcctcccgtgacttgtttcttgctggctacgaaaagtgacaatgtttgcaaagaagtgagcttacttattccacttggcatttgag |
11828376 |
T |
|
| Q |
399 |
ttagatccaagcacccctctaagtcaagatggttgaggcaactcaaatcatccatgtcttttggcaattccttgaggacatgacattgagacagtttcaa |
498 |
Q |
| |
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||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
11828375 |
ttagatccaagcatccatctaagtcaagatggttaaggcaactcaaatcatccatgtcttttggcaattctttgaggacatgacatcgagacagtttcaa |
11828276 |
T |
|
| Q |
499 |
tgtttgcaagtggataa |
515 |
Q |
| |
|
|||||||||||||||| |
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| T |
11828275 |
cgtttgcaagtggataa |
11828259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 152 - 515
Target Start/End: Complemental strand, 12039522 - 12039159
Alignment:
| Q |
152 |
tcctcctcgtgatcccatcttagagtcaagaactcgagatgttgtttatttttcaaaaattcatctttggcagcttcctttgatggagagaacttgactt |
251 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| | || | || ||| |||||||||||||||||||| ||| |||||| ||| | ||||||||||||| |
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| T |
12039522 |
tcctcctcatgatcccatcttagagtcaagaacccaaggtattttttgtttttcaaaaattcatctttagcaatttccttggattgcgagaacttgactt |
12039423 |
T |
|
| Q |
252 |
gttcaagatgagatatttccaagtggcctctcagtttgttaagatctgtgagtgatcttagtcctcccgtgacttgtttcttgctggcaacgaaaagtga |
351 |
Q |
| |
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|||| ||||| || ||||||| ||| |||||||||||||| ||||| |||||| |||||||||||| || || | ||||||||| || || || ||||| |
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| T |
12039422 |
gttccagatgcgaaatttccatgtgacctctcagtttgttgagatcggtgagttctcttagtcctcctgtaacgtatttcttgctagctacaaagagtga |
12039323 |
T |
|
| Q |
352 |
caatgtttgcaaggaagtgagcttacttatcccacttggcatttgagttagatccaagcacccctctaagtcaagatggttgaggcaactcaaatcatcc |
451 |
Q |
| |
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||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
12039322 |
caatgtttgtaaagaagtgagcttatttatcccacttggcatttgagttagatccaagcatccctctaagtcaagatggttgaggcaactcaaatcatcc |
12039223 |
T |
|
| Q |
452 |
atgtcttttggcaattccttgaggacatgacattgagacagtttcaatgtttgcaagtggataa |
515 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| |||||||| |||||||||||||||| |
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|
| T |
12039222 |
atgtcttttggcaattccttgagaaaatgacattgagaaagtttcaacgtttgcaagtggataa |
12039159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 161 - 515
Target Start/End: Original strand, 11901806 - 11902163
Alignment:
| Q |
161 |
tgatcccatcttagagtcaagaactcgagatgttgtttatttttcaaaaattcatctttggcagcttcctttgatggagagaacttgacttgttcaagat |
260 |
Q |
| |
|
|||||||||||||||||||| ||||| || |||||||||||||||| ||||||||||| ||||||||||| |||||||||||| |||||||||| |||| |
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|
| T |
11901806 |
tgatcccatcttagagtcaaaaactcaaggtgttgtttatttttcagaaattcatcttgagcagcttccttagatggagagaacatgacttgttctagat |
11901905 |
T |
|
| Q |
261 |
gagatatttccaagtggcctctcagtttgttaagatctgtgagtgatcttagtcctcccgtga---cttgtttcttgctggcaacgaaaagtgacaatgt |
357 |
Q |
| |
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| ||||||||||| |||||||||| ||||||||||| |||||| |||||||||||| |||| |||||||||||||||| || || ||||||||||| |
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| T |
11901906 |
gcgatatttccaaccggcctctcagattgttaagatccgtgagttctcttagtcctccagtgattacttgtttcttgctggccacaaagagtgacaatgt |
11902005 |
T |
|
| Q |
358 |
ttgcaaggaagtgagcttacttatcccacttggcatttgagttagatccaagcacccctctaagtcaagatggttgaggcaactcaaatcatccatgtct |
457 |
Q |
| |
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||| || |||||||||||| |||| ||||||||||| ||||||||||||| ||| ||||| | ||||||||||||||||||||||| |||||| |||| |
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| T |
11902006 |
ttgtaaagaagtgagcttatttataccacttggcatgtgagttagatccaggcatccctcaatgtcaagatggttgaggcaactcaggccatccaagtct |
11902105 |
T |
|
| Q |
458 |
tttggcaattccttgaggacatgacattgagacagtttcaatgtttgcaagtggataa |
515 |
Q |
| |
|
||||||||||||||||||| |||||||| || | ||||||||||||||||||||||| |
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| T |
11902106 |
tttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataa |
11902163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 191 - 515
Target Start/End: Complemental strand, 11732366 - 11732039
Alignment:
| Q |
191 |
tgttgtttatttttcaaaaattcatctttggcagcttcctttgatggagagaacttgacttgttcaagatgagatatttccaagtggcctctcagtttgt |
290 |
Q |
| |
|
|||||||||||||||| |||||||||||| || ||||| || |||||||||||||||||||| || ||||| | ||||||| | | | | || |||| |
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|
| T |
11732366 |
tgttgtttatttttcacaaattcatctttagccgcttcgttggatggagagaacttgacttgctccagatgcaaaatttccagtttgtccttgaggttgt |
11732267 |
T |
|
| Q |
291 |
taagatctgtgagtgatcttagtcctcccgtgact---tgtttcttgctggcaacgaaaagtgacaatgtttgcaaggaagtgagcttacttatcccact |
387 |
Q |
| |
|
| |||| ||||||| ||||||||||| ||| | |||||||||||||| |||||||||||||||||||| ||||||||||| ||| |||||| | |
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| T |
11732266 |
tgagatttgtgagttcccttagtcctccggtgtcagcatgtttcttgctggccacgaaaagtgacaatgtttgtaaggaagtgagtttatctatcccggt |
11732167 |
T |
|
| Q |
388 |
tggcatttgagttagatccaagcacccctctaagtcaagatggttgaggcaactcaaatcatccatgtcttttggcaattccttgaggacatgacattga |
487 |
Q |
| |
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|||||| ||||||||||||||||| ||||| | || ||||||| |||||| | ||| ||| | || |||||||||||||||||||||||||||||| | |
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| T |
11732166 |
tggcatgtgagttagatccaagcaaccctcaatgttaagatggctgaggcgagtcagatccttcaagtcttttggcaattccttgaggacatgacagtag |
11732067 |
T |
|
| Q |
488 |
gacagtttcaatgtttgcaagtggataa |
515 |
Q |
| |
|
|| |||||||| |||||||| ||||||| |
|
|
| T |
11732066 |
gagagtttcaaggtttgcaaatggataa |
11732039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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