View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21141_low_8 (Length: 354)
Name: NF21141_low_8
Description: NF21141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21141_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 38 - 338
Target Start/End: Original strand, 24990922 - 24991222
Alignment:
| Q |
38 |
ttactagttaaaaattgtgcactatcaaatttcatgtaaaattttgtataatgtagggttggggattgactgtactattgggaattcatggatcaccaaa |
137 |
Q |
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| T |
24990922 |
ttactagttaaaaattgtgcactatcaaatttcatgtaaaattttgtataatgtagggttggggattgactgtactattgggaattcatggatcaccaaa |
24991021 |
T |
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| Q |
138 |
gttgcttcccatccacccaatggagctctttgatggtcgcagaatcgaaggttcagtgttcggaggtttcaaaggcaaaagtcaattgcctaatcttgcc |
237 |
Q |
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| T |
24991022 |
gttgcttcccatccacccaatggagctctttgatggtcgcagaatcgaaggttcagtgttcggaggtttcaaaggcaaaagtcaattgcctaatcttgcc |
24991121 |
T |
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| Q |
238 |
acagaatgcatgaaaggggtaaatgatcatcactacttgcaaaaactcaaattatgcgacgcgttttaatgtgcaaataattatattcttctattatttt |
337 |
Q |
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| T |
24991122 |
acagaatgcatgaaaggggtaaatgatcatcactacttgcaaaaactcaaattatgcgacgcattttaatgtgcaaataattatattcttctattatttt |
24991221 |
T |
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| Q |
338 |
t |
338 |
Q |
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| T |
24991222 |
t |
24991222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 48 - 338
Target Start/End: Original strand, 24994607 - 24994891
Alignment:
| Q |
48 |
aaaattgtgcactatcaaatttcatgtaaaattttgtataatgtagggttggggattgactgtactattgggaattcatggatcaccaaagttgcttccc |
147 |
Q |
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|||| ||||||||||||||||| |||| |||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||| |
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| T |
24994607 |
aaaactgtgcactatcaaattttatgtctaatt--gtataatgtagggttggggattgactatactattgggaattcatgcatcaccaaagttacttcct |
24994704 |
T |
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| Q |
148 |
atccacccaatggagctctttgatggtcgcagaatcgaaggttcagtgttcggaggtttcaaaggcaaaagtcaattgcctaatcttgccacagaatgca |
247 |
Q |
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| T |
24994705 |
ctccacccaatggagctctttgatggccgcaaaatcgaaggatcggtctttggaggtttcaaaggcaaaagtcaattgcctaatcttgccacagaatgca |
24994804 |
T |
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| Q |
248 |
tgaaaggggtaaatgatcatcactacttgcaaaaactcaaattatgcgacgcgttttaatgtgcaaataattatattcttctattattttt |
338 |
Q |
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| T |
24994805 |
tgaaaggggt-aatgatcatcacta---gcaaaaactcaaattatgcgatgcgttttagtgtccaagtaattatattcttctattattttt |
24994891 |
T |
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