View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21141_low_9 (Length: 343)

Name: NF21141_low_9
Description: NF21141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21141_low_9
NF21141_low_9
[»] chr7 (19 HSPs)
chr7 (18-329)||(22028082-22028393)
chr7 (18-157)||(22036528-22036673)
chr7 (18-157)||(16839858-16840006)
chr7 (18-157)||(16846941-16847089)
chr7 (49-156)||(22020844-22020960)
chr7 (197-240)||(12820319-12820362)
chr7 (24-82)||(22039725-22039783)
chr7 (257-298)||(22021049-22021090)
chr7 (18-141)||(16841421-16841553)
chr7 (191-234)||(15572352-15572395)
chr7 (35-82)||(22018754-22018801)
chr7 (263-300)||(20351791-20351828)
chr7 (261-298)||(22036771-22036808)
chr7 (197-238)||(22039820-22039861)
chr7 (260-297)||(22063329-22063366)
chr7 (260-297)||(22069798-22069835)
chr7 (260-297)||(22088280-22088317)
chr7 (259-300)||(24391076-24391117)
chr7 (50-82)||(36254804-36254836)
[»] chr5 (3 HSPs)
chr5 (197-290)||(3234279-3234369)
chr5 (104-154)||(42297639-42297689)
chr5 (108-157)||(3234400-3234449)
[»] scaffold0128 (1 HSPs)
scaffold0128 (104-145)||(25152-25193)
[»] scaffold0097 (1 HSPs)
scaffold0097 (260-300)||(16721-16761)
[»] chr4 (1 HSPs)
chr4 (50-82)||(19356933-19356965)
[»] chr2 (3 HSPs)
chr2 (192-240)||(10205818-10205866)
chr2 (48-88)||(10205972-10206012)
chr2 (260-300)||(20712882-20712922)


Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-169; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 22028082 - 22028393
Alignment:
Q  18 actatagtttgaaggaaaaggactgtactttggttgttggttcttgcaatggattgctatgtttggtcggttgttctaatgagatatggttccgtgtctg 117  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22028082 actatagtttgaaggaaaaggactgtactatggttgttgattcttgcaatggattgctatgtttggtcggttgttctaatgagatatggttccgtgtctg 22028181  T
Q  118 gaaccctgctaccaggacaatatctgataaataagggcatgctgacctccctgacctcacacagacccttttgaagtttacatttggttatgataattca 217  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22028182 gaaccctgctaccaggacaatatctgataaattagggcatgctgacctccctgacctcacacagacccttttgaagtttacatttggttatgataattca 22028281  T
Q  218 actgatacttacaaggtagtggctttagaagacgcagcagcgagagtttttagtttgggcgataatgtttggaggaatattcattttccagtctattttt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22028282 actgatacttacaaggtagtggctttagaagacgcagcagcgagagtttttagtttgggcgataatgtttggaggaatattcattttccagtctattttt 22028381  T
Q  318 acctagatgatg 329  Q
    ||||||||||||    
T  22028382 acctagatgatg 22028393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 22036528 - 22036673
Alignment:
Q  18 actatagtttgaaggaaaaggactgtactttggttgttggttcttgcaatggattgctatgtttggtcggttgttc------taatgagatatggttccg 111  Q
    ||||||||||||| || ||||| |||  ||  |||| ||||||||||||||||||| |||||||| | |||  |||      ||  ||||| ||| ||||    
T  22036528 actatagtttgaatgataaggattgtcgttctgttgctggttcttgcaatggattgttatgtttgttgggtctttccgaggatagagagatgtggctccg 22036627  T
Q  112 tgtctggaaccctgctaccaggacaatatctgataaataagggcat 157  Q
    | |||||||||||||||||||| ||||||||||||||| |||||||    
T  22036628 tttctggaaccctgctaccagggcaatatctgataaattagggcat 22036673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 16840006 - 16839858
Alignment:
Q  18 actatagtttgaaggaaaaggactgtactttggttgttggttcttgcaatggattgctatgtttggtcggttgttctaat---------gagatatggtt 108  Q
    |||||||||||||||| ||||| ||  ||   ||||||||||| | |||||||||| |||||||| |||||| ||||  |         ||||| |||||    
T  16840006 actatagtttgaaggataaggattgctctaatgttgttggttcctacaatggattgatatgtttgctcggttattcttttaagtctgacgagatgtggtt 16839907  T
Q  109 ccgtgtctggaaccctgctaccaggacaatatctgataaataagggcat 157  Q
    |||  |||||||||||||||||||||||||||| ||||||| |||||||    
T  16839906 ccggttctggaaccctgctaccaggacaatatcagataaattagggcat 16839858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 16847089 - 16846941
Alignment:
Q  18 actatagtttgaaggaaaaggactgtactttggttgttggttcttgcaatggattgctatgtttggtcggttgttctaatgag---------atatggtt 108  Q
    |||||||||||||||| ||||| ||  ||   ||||||||||| | |||||||||| |||||||| |||||| ||||  ||||         || |||||    
T  16847089 actatagtttgaaggataaggattgctctaatgttgttggttcctacaatggattgatatgtttgctcggttattcttttgagcgtagacagatgtggtt 16846990  T
Q  109 ccgtgtctggaaccctgctaccaggacaatatctgataaataagggcat 157  Q
    |||| | |||||||||||||||||||||||||| ||||||| |||||||    
T  16846989 ccgtttttggaaccctgctaccaggacaatatcagataaattagggcat 16846941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 156
Target Start/End: Original strand, 22020844 - 22020960
Alignment:
Q  49 ggttgttggttcttgcaatggattgctatgtttggtcggttgttct----aat-----gagatatggttccgtgtctggaaccctgctaccaggacaata 139  Q
    ||||| ||||||||||||||||||||| ||||||   |||||||||    |||     ||||| ||| ||||| |||||||||||||||| |||||||||    
T  22020844 ggttgctggttcttgcaatggattgctttgtttgtatggttgttctgacaaatctagagagatgtggctccgtttctggaaccctgctacaaggacaata 22020943  T
Q  140 tctgataaataagggca 156  Q
    |||||||||| ||||||    
T  22020944 tctgataaattagggca 22020960  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 12820362 - 12820319
Alignment:
Q  197 acatttggttatgataattcaactgatacttacaaggtagtggc 240  Q
    |||||||||||||||||||||||||| ||||||||||| |||||    
T  12820362 acatttggttatgataattcaactgacacttacaaggtggtggc 12820319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 22039725 - 22039783
Alignment:
Q  24 gtttgaaggaaaaggactgtactttggttgttggttcttgcaatggattgctatgtttg 82  Q
    |||||||||| ||||||||   ||  |||||||||||||||||||||||||||||||||    
T  22039725 gtttgaaggataaggactgcttttcagttgttggttcttgcaatggattgctatgtttg 22039783  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 298
Target Start/End: Original strand, 22021049 - 22021090
Alignment:
Q  257 gcgagagtttttagtttgggcgataatgtttggaggaatatt 298  Q
    |||||||| |||||||||||||||||||||||||| ||||||    
T  22021049 gcgagagtatttagtttgggcgataatgtttggagaaatatt 22021090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 16841553 - 16841421
Alignment:
Q  18 actatagtttgaaggaaaaggactgtactttggttgttggttcttgcaatggattgctatgtttggtcggttgttctaatgag---------atatggtt 108  Q
    |||||||||||||||| ||||| ||  ||   ||||||||||| | |||||||||| |||||||| |||||| ||||  ||||         || |||||    
T  16841553 actatagtttgaaggataaggattgctctaatgttgttggttcctacaatggattgatatgtttgctcggttattcttttgagtctagagagatgtggtt 16841454  T
Q  109 ccgtgtctggaaccctgctaccaggacaatatc 141  Q
    |||| | ||||||||||||||||||||||||||    
T  16841453 ccgtttttggaaccctgctaccaggacaatatc 16841421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 234
Target Start/End: Complemental strand, 15572395 - 15572352
Alignment:
Q  191 aagtttacatttggttatgataattcaactgatacttacaaggt 234  Q
    |||||| |||||||||||||||||||||| || |||||||||||    
T  15572395 aagtttgcatttggttatgataattcaaccgacacttacaaggt 15572352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 22018754 - 22018801
Alignment:
Q  35 aaggactgtactttggttgttggttcttgcaatggattgctatgtttg 82  Q
    ||||| |||||||| |||||||| |||||||||||| |||||||||||    
T  22018754 aaggattgtacttttgttgttggctcttgcaatggagtgctatgtttg 22018801  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 300
Target Start/End: Original strand, 20351791 - 20351828
Alignment:
Q  263 gtttttagtttgggcgataatgtttggaggaatattca 300  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  20351791 gttttaagtttgggcgataatgtttggagaaatattca 20351828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Original strand, 22036771 - 22036808
Alignment:
Q  261 gagtttttagtttgggcgataatgtttggaggaatatt 298  Q
    |||| |||||||||||||||||||||||||| ||||||    
T  22036771 gagtatttagtttgggcgataatgtttggagaaatatt 22036808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 22039820 - 22039861
Alignment:
Q  197 acatttggttatgataattcaactgatacttacaaggtagtg 238  Q
    |||||||| |||||||||||||| |||||||| |||||||||    
T  22039820 acatttggatatgataattcaacagatacttataaggtagtg 22039861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 297
Target Start/End: Original strand, 22063329 - 22063366
Alignment:
Q  260 agagtttttagtttgggcgataatgtttggaggaatat 297  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  22063329 agagtttttagtttgggcgttaatgtttggagaaatat 22063366  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 297
Target Start/End: Original strand, 22069798 - 22069835
Alignment:
Q  260 agagtttttagtttgggcgataatgtttggaggaatat 297  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  22069798 agagtttttagtttgggcgttaatgtttggagaaatat 22069835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 297
Target Start/End: Original strand, 22088280 - 22088317
Alignment:
Q  260 agagtttttagtttgggcgataatgtttggaggaatat 297  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  22088280 agagtttttagtttgggcgttaatgtttggagaaatat 22088317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Original strand, 24391076 - 24391117
Alignment:
Q  259 gagagtttttagtttgggcgataatgtttggaggaatattca 300  Q
    |||||||||||||||||| |||||| ||||||| ||||||||    
T  24391076 gagagtttttagtttgggtgataatatttggagaaatattca 24391117  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 82
Target Start/End: Original strand, 36254804 - 36254836
Alignment:
Q  50 gttgttggttcttgcaatggattgctatgtttg 82  Q
    |||||||||||||||||||||||||| ||||||    
T  36254804 gttgttggttcttgcaatggattgctttgtttg 36254836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 290
Target Start/End: Complemental strand, 3234369 - 3234279
Alignment:
Q  197 acatttggttatgataattcaactgatacttacaaggtagtggctttagaagacgcagcagcgagagtttttagtttgggcgataatgtttgga 290  Q
    ||||||||||||||||||||||  |||||||| |||||||| || ||||||    |||  || ||||||||||||||  |||||||||||||||    
T  3234369 acatttggttatgataattcaatggatacttataaggtagttgccttagaa---ccagaggcaagagtttttagtttccgcgataatgtttgga 3234279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 42297639 - 42297689
Alignment:
Q  104 tggttccgtgtctggaaccctgctaccaggacaatatctgataaataaggg 154  Q
    ||||||||| |||||||||| |||||||||| |||||||||||||| ||||    
T  42297639 tggttccgtttctggaaccccgctaccaggagaatatctgataaattaggg 42297689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 3234449 - 3234400
Alignment:
Q  108 tccgtgtctggaaccctgctaccaggacaatatctgataaataagggcat 157  Q
    ||||| |||||||||||||||| ||||| ||||| ||||||| |||||||    
T  3234449 tccgtttctggaaccctgctacaaggaccatatcggataaattagggcat 3234400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 25152 - 25193
Alignment:
Q  104 tggttccgtgtctggaaccctgctaccaggacaatatctgat 145  Q
    ||||||||| ||||||||||||||||||| | ||||||||||    
T  25152 tggttccgtttctggaaccctgctaccagaaaaatatctgat 25193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 300
Target Start/End: Complemental strand, 16761 - 16721
Alignment:
Q  260 agagtttttagtttgggcgataatgtttggaggaatattca 300  Q
    |||||||| | ||||||||||||||||||||| ||||||||    
T  16761 agagttttcactttgggcgataatgtttggagaaatattca 16721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 82
Target Start/End: Original strand, 19356933 - 19356965
Alignment:
Q  50 gttgttggttcttgcaatggattgctatgtttg 82  Q
    |||||||||||||||||||||||||| ||||||    
T  19356933 gttgttggttcttgcaatggattgctttgtttg 19356965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 10205866 - 10205818
Alignment:
Q  192 agtttacatttggttatgataattcaactgatacttacaaggtagtggc 240  Q
    |||||||||||||||||||||||| |||  ||||||| ||||| |||||    
T  10205866 agtttacatttggttatgataatttaacaaatacttataaggtggtggc 10205818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 10206012 - 10205972
Alignment:
Q  48 tggttgttggttcttgcaatggattgctatgtttggtcggt 88  Q
    ||||||| ||||| ||||||||||||||||||||| |||||    
T  10206012 tggttgtcggttcctgcaatggattgctatgtttgctcggt 10205972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 300
Target Start/End: Complemental strand, 20712922 - 20712882
Alignment:
Q  260 agagtttttagtttgggcgataatgtttggaggaatattca 300  Q
    |||||||| | ||||||||||||||||||||| ||||||||    
T  20712922 agagttttcactttgggcgataatgtttggagaaatattca 20712882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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