View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21142_high_1 (Length: 1780)
Name: NF21142_high_1
Description: NF21142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21142_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 935; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 935; E-Value: 0
Query Start/End: Original strand, 19 - 1047
Target Start/End: Original strand, 5621179 - 5622206
Alignment:
| Q |
19 |
attacactggccattgataaccagataccacatgtagaactatattattggttttactttcctctttattaaaatggtgtaaaga-tgatccaaattcat |
117 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5621179 |
attatactggccattgataaccagataccacatgtagaactatattattggttttacttacctctttattaaaatggtgtaaagaatgatccaaattcat |
5621278 |
T |
|
| Q |
118 |
ctccatcaactttatatttcaaaatttagcgaacttaagtcacttgtaccagctgatcaatggaggtgttgtttatataaatctggtgttttaagctggt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5621279 |
ctccatcaactttatatttcaaaatttagcgaacttaagtcacttgtaccagctgatcaatggaggtgttgtttatataaatctggtgttttaagctggt |
5621378 |
T |
|
| Q |
218 |
tcagttttcatacataaatttatatcttttaacagggatgagggagtccgctggggaatacagaatggcctttatctttctagaagcacagtggtatatt |
317 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5621379 |
tcagtt--catacataaatttatatcttttaacagggatgagggagtccactggggaatacagaatggcctttatctttctagaagcacagtggtatatt |
5621476 |
T |
|
| Q |
318 |
ttaagcacaataacatggattctttaagagaaactttagagaacattacttccaaatataagaggaccaagaatttgaggcgttatattgtcattgaagc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5621477 |
ttaagcacaataacatggattctttaagagaaactttagagaacattacttccatatataagaggaccaagaatttgaggcgttatattgtcattgaagc |
5621576 |
T |
|
| Q |
418 |
tctctaccaggtagatctcgtcgttcatgcatgctgttttatttactttacacatctgtaccgtgcttccaatggagcgcgtacaacatttaggtttaaa |
517 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||| ||||||||||||||| |||| |
|
|
| T |
5621577 |
tctctaccaggtagatctcatcgttcatgcatgctgttatatttactttacacatctgtactgtgcttctgatggagcgtgtacaacatttaggtataaa |
5621676 |
T |
|
| Q |
518 |
atcaaagagctataccaattgcttgcttcttgcaacttgtggtatcggtaaattgtactatatgaactactatttctgcagagatattacagtaattaga |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5621677 |
atcaaagagctataccaattgcttgcttcttgcaacttgtggtatcggtaaattgtactatatgaactactatttctgctgagatattacagtaattagc |
5621776 |
T |
|
| Q |
618 |
aaatgaaatttgaatatgtatttatgaaggattgtagtaaacactttgagtctgttggtgttgctgttatattggtgtctattgcgatgttgttccttaa |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5621777 |
aaatgaaatttgaatatgtatttatgaaggattgtagtaaacactttgagtctgttggcgttgctgttatattggtgtctattgcgatgttgttccttaa |
5621876 |
T |
|
| Q |
718 |
aaaagtattactaatctgctacttgccctggttttctcaaccattaagttgtaatagttattttttctgtagttgtcatactaacgacatctattatgct |
817 |
Q |
| |
|
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5621877 |
aagagtattgctaatctgctacttgccctggttttctcaaccattaagttgtaatagttattttttctgtagttgtcatactaacaacatctattatgct |
5621976 |
T |
|
| Q |
818 |
cataatatgccttacctgctgcatgcaaactaaaattgcttgatcagtaactattgacaattgtttcctcgacattttttcagaactctggccaaatagc |
917 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5621977 |
cataatatgccttacctgctgcatgcaaactaaaattgcttgatcagtaactattgacaattgtttcctcgacattttttcagaactctggccaaatagc |
5622076 |
T |
|
| Q |
918 |
acccttagatgagatcattaaattgaaggaaaaatatcgttttcgtattttactggatgagagcaactcatttggtgtgcttggaagttctggaagagat |
1017 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5622077 |
acccttagatgagatcattaaattgaaggaaaaatattgttttcgtattttactggatgagagcaactcatttggtgtgcttggaagttctggaagaggt |
5622176 |
T |
|
| Q |
1018 |
ctcactgaacactatggagttccagtatgt |
1047 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
5622177 |
ctcactgaacactatggagttccagtatgt |
5622206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 1102 - 1769
Target Start/End: Original strand, 5638469 - 5639137
Alignment:
| Q |
1102 |
aaataaattttaaattgtacttctgtttatgattagtggttgtgtgctgcaggttgataagttagatcttataactgctgctatgggacatgcactggcc |
1201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5638469 |
aaataaattttaaattgtacttctgtttatgattagtggttgtgtgctgcaggttgataagttagatcttataactgctgctatgggacatgcactggcc |
5638568 |
T |
|
| Q |
1202 |
acagaaggaggattctgcacgggaagtgcaagagttatagatcaccaagtatggtagtgtcatatgtgatactgttcataaccttcttggatttccatgt |
1301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5638569 |
acagaaggaggattctgcacgggaagtgcaagagttatagatcaccaagtatggtagtgtcatatgtgatactgttcataaccttcttggatttccatgt |
5638668 |
T |
|
| Q |
1302 |
atactgaaacactaaaagagaagaaagattgtaaatgtggaaattaagaatttacttcctccaaactcaaatttaagtnnnnnnnntagtcatggtttgt |
1401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5638669 |
atactgaaacactaaaagagaagaaagattgtaaatgtggaaattaagaatttacttcctccaaactcaaatttaagtaaaaaaaatagtcatggtttgt |
5638768 |
T |
|
| Q |
1402 |
ggtccataatatataagaaaattctaattaattttactggattactgttatatttcaattagtgttaaacaccactcaattaatgctctcatgaaacaag |
1501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5638769 |
ggtccataatatataagaaaattctaattaattttactggattactgttatatttcaattagtgttaaacaccactcaattaatgctctcatgaaacaag |
5638868 |
T |
|
| Q |
1502 |
tttcaaaggaaatttagtga-gagaatgatagttcggagaatgcaattttcttattgcaccaagaaaaataagcaagcttaactaatattcttacttagt |
1600 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
5638869 |
tttcaaaggaaatttagtgaagagaatgatagttcggagaatgcaattttcttattgcaccaagaaaaataagcaaggttaactaatattcttaattagt |
5638968 |
T |
|
| Q |
1601 |
acgtatttagttaattttacttaaatttgagttcagagggagtgtttttcacggaacttctttcattttttcccccacgtttccttcattaatacctgaa |
1700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5638969 |
acgtatttagttaattttacttaaatttgagttcggagggagtgtttttcacggaacttctttcattttttcccccacgtttccttcattaatacctgaa |
5639068 |
T |
|
| Q |
1701 |
tttgcaggtctgaactataaaatttgcatgataaagcgatgtgcataaccaagtgattggttgatgatg |
1769 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5639069 |
tttgcaggtctgaactataaaatttgcatgataaagcgatgtgcataaccaagtgattggttgatgatg |
5639137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 8e-22
Query Start/End: Original strand, 1683 - 1749
Target Start/End: Original strand, 22965261 - 22965327
Alignment:
| Q |
1683 |
ccttcattaatacctgaatttgcaggtctgaactataaaatttgcatgataaagcgatgtgcataac |
1749 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
22965261 |
ccttcattaatacctgaatttgcaggtccgaactataaaatttgcatgattaagtgatgtgcataac |
22965327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1040 - 1081
Target Start/End: Original strand, 5638407 - 5638448
Alignment:
| Q |
1040 |
cagtatgtactaaaaagttctatttgggcgtgggtgtgtata |
1081 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5638407 |
cagtatgtactgaaaagttctatttgggcgtgggtgtgtata |
5638448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 131; Significance: 3e-67; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 3e-67
Query Start/End: Original strand, 895 - 1049
Target Start/End: Complemental strand, 30634741 - 30634587
Alignment:
| Q |
895 |
tttcagaactctggccaaatagcacccttagatgagatcattaaattgaaggaaaaatatcgttttcgtattttactggatgagagcaactcatttggtg |
994 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30634741 |
tttcagaattctggtcaaatagcacccttagatgatatcattaaattgaaggaaaaatatcggtttcgtattttactggatgagagcaactcatttggtg |
30634642 |
T |
|
| Q |
995 |
tgcttggaagttctggaagagatctcactgaacactatggagttccagtatgtac |
1049 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
30634641 |
tgcttggaagttctggaagaggtctcactgaacactacggagttccagtatgtac |
30634587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 2e-62
Query Start/End: Original strand, 223 - 433
Target Start/End: Complemental strand, 30635428 - 30635218
Alignment:
| Q |
223 |
tttcatacataaatttatatcttttaacagggatgagggagtccgctggggaatacagaatggcctttatctttctagaagcacagtggtatattttaag |
322 |
Q |
| |
|
||||||| |||| ||| ||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| || || ||||||||| |
|
|
| T |
30635428 |
tttcatatataattttgtattttttaacagggatgaaggagtccactggggaatacagaatggcctttatctttctagaagcactgtcgtgtattttaag |
30635329 |
T |
|
| Q |
323 |
cacaataacatggattctttaagagaaactttagagaacattacttccaaatataagaggaccaagaatttgaggcgttatattgtcattgaagctctct |
422 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||| ||||||| || |||||| |||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
30635328 |
cacaatgacatggattctttagaagaaactttagagaagcttacttctaagtataagcacaccaagaatttgaggcgttatattgttgtcgaagctctct |
30635229 |
T |
|
| Q |
423 |
accaggtagat |
433 |
Q |
| |
|
||||||||||| |
|
|
| T |
30635228 |
accaggtagat |
30635218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 8e-56
Query Start/End: Original strand, 1137 - 1310
Target Start/End: Complemental strand, 30634501 - 30634326
Alignment:
| Q |
1137 |
gtggttgtgtgctgcaggttgataagttagatcttataactgctgctatgggacatgcactggccacagaaggaggattctgcacgggaagtgcaagagt |
1236 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30634501 |
gtggtcgtgtgctgcaggttgagaagttagatcttataactgctgctatgggacatgcattggccacagaaggaggattctgcaccggaagtgcaagagt |
30634402 |
T |
|
| Q |
1237 |
tatagatcaccaagtatggtagtgtcatatgtgatactg-ttcat-aaccttcttggatttccatgtatactgaaa |
1310 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||| |||||| ||||| |||| ||| |||||||| || |||||||| |
|
|
| T |
30634401 |
tatagatcaccaggtatggtagtgtcatttgtaatactgattcataaaccaacttagatttccaagtgtactgaaa |
30634326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 3e-67; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 3e-67
Query Start/End: Original strand, 895 - 1049
Target Start/End: Complemental strand, 21423527 - 21423373
Alignment:
| Q |
895 |
tttcagaactctggccaaatagcacccttagatgagatcattaaattgaaggaaaaatatcgttttcgtattttactggatgagagcaactcatttggtg |
994 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
21423527 |
tttcagaattctggtcaaatagcacccttagatgatatcattaaattgaaggaaaaatatcggtttcgtattttactggatgagagcaactcatttggcg |
21423428 |
T |
|
| Q |
995 |
tgcttggaagttctggaagagatctcactgaacactatggagttccagtatgtac |
1049 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
21423427 |
tgcttggaagttctggaagaggtctcactgaacactatggagttccagtatgtac |
21423373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 5e-60
Query Start/End: Original strand, 223 - 433
Target Start/End: Complemental strand, 21424229 - 21424019
Alignment:
| Q |
223 |
tttcatacataaatttatatcttttaacagggatgagggagtccgctggggaatacagaatggcctttatctttctagaagcacagtggtatattttaag |
322 |
Q |
| |
|
||||||| |||| ||| ||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| || || ||||||||| |
|
|
| T |
21424229 |
tttcatatataattttgtattttttaacagggatgaaggagtccactggggaatacagaatggcctttatctttctagaagcactgtcgtgtattttaag |
21424130 |
T |
|
| Q |
323 |
cacaataacatggattctttaagagaaactttagagaacattacttccaaatataagaggaccaagaatttgaggcgttatattgtcattgaagctctct |
422 |
Q |
| |
|
|||||| |||||||||||||| |||||| |||||||| ||| ||| ||||||||| |||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
21424129 |
cacaatgacatggattctttagaagaaacattagagaagcttagttctaaatataagcacaccaagaatttgaggcgttatattgttgtcgaagctctct |
21424030 |
T |
|
| Q |
423 |
accaggtagat |
433 |
Q |
| |
|
||||||||||| |
|
|
| T |
21424029 |
accaggtagat |
21424019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 3e-52
Query Start/End: Original strand, 1143 - 1264
Target Start/End: Complemental strand, 21423281 - 21423160
Alignment:
| Q |
1143 |
gtgtgctgcaggttgataagttagatcttataactgctgctatgggacatgcactggccacagaaggaggattctgcacgggaagtgcaagagttataga |
1242 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
21423281 |
gtgtgctgcaggttgagaagttagatcttataactgctgctatgggacatgcattggccacagaaggaggattctgcaccggaagtgcaagagttataga |
21423182 |
T |
|
| Q |
1243 |
tcaccaagtatggtagtgtcat |
1264 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
21423181 |
tcaccaggtatggtagtgtcat |
21423160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 1685 - 1749
Target Start/End: Complemental strand, 38954654 - 38954590
Alignment:
| Q |
1685 |
ttcattaatacctgaatttgcaggtctgaactataaaatttgcatgataaagcgatgtgcataac |
1749 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38954654 |
ttcattaatacctgaatttgcaggtccaaactataaaatttgcatgattaagcgatgtgcataac |
38954590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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