View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21142_high_10 (Length: 250)
Name: NF21142_high_10
Description: NF21142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21142_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 52026118 - 52026354
Alignment:
| Q |
1 |
gtgtgttttttacttcatgcatactagtatactatactattcaagacgagattctattttttgttattctcaattcaaacagactagtctctatatttca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
52026118 |
gtgtgttttttacttcatgcatactagtatactatactattcaagacgagattctattttttgttattctcaattcaaacagactagtctc--tatttca |
52026215 |
T |
|
| Q |
101 |
caacaagnnnnnnntatgtcatttgtcaagagcatggacccttgggaaatttgcgagggtcaaagtcatggatacctctcatatttgcaccaatcgctca |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
52026216 |
caacaagaaaaaaatatgtcatttgtcaagagcatggacccttgggaaatttgcgagggtcaaagtcatggatacctctcatatttgcacaaatcgctct |
52026315 |
T |
|
| Q |
201 |
nnnnnnnaggtgagaaaacttcctcccgttcaatttcat |
239 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |
|
|
| T |
52026316 |
ttttttttggcgagaaaacttcctcccgttcaatttcat |
52026354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University