View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21142_high_3 (Length: 643)
Name: NF21142_high_3
Description: NF21142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21142_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 601; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 1 - 621
Target Start/End: Original strand, 10239321 - 10239941
Alignment:
| Q |
1 |
atgaagagtttgccgttaaaatcataacggccgattgtttggatatcaccgtttggtgtaactttgatttcataaggaagatctgattctcctaaagcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10239321 |
atgaagagtttgccgttaaaatcataacggcctattgtttggatatcaccgtttggtgtaactttgatttcataaggaagatctgattctcctaaagcaa |
10239420 |
T |
|
| Q |
101 |
aaagacggttgccaaacagagccaaacttgtgttgatcaatccaatgccgttaattggattatactgaccagttaacacacgtgctacagccacggatcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10239421 |
aaagacggttgccaaacagagccaaacttgtgttgatcaatccaatgccgttaattggattatactgaccagttaacacacgtgctacagccacggatcc |
10239520 |
T |
|
| Q |
201 |
acgtgccgctaaaccaataagcgagttgaaaccagaaaacacgtttgggagaatttggtaaccagcttcgttttcgattttgtatttataggtttgaacg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10239521 |
acgtgccgctaaaccaataagcgagttgaaaccagaaaacacgtttgggagaatttggtaaccagcttcgttttcgattttgtatttataggtttgaacg |
10239620 |
T |
|
| Q |
301 |
taacggctacatagtgtggcttttccgtttgtgattttaacagcatgaagcatgccgtcaccgtcaaagagatggtaaggtccacgtggaaggaactgag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10239621 |
taacggctacatagtgtggcttttccgtttgtgattttaacagcatgaagcatgccgtcaccgtcaaagagatggtaaggtccacgtggaaggaactgag |
10239720 |
T |
|
| Q |
401 |
ggtttggtccgtttcttatgtaaacaccgttaagtgacggtggaagtgtgcctttaatgactttgcattgtgttggagggagttcgtctaggactggtgc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
10239721 |
ggtttggtccgtttcttatgtaaacaccgttaagtgacggtggaagtgtgcctttaatgactttgcattgtgttggagggagttcgtcaaggactggtgc |
10239820 |
T |
|
| Q |
501 |
aaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaagatgttgataatgtcatcgagtgtgttgagtattagtgct |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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|
| T |
10239821 |
aaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaaggtgttgatgatgtcatcgagtgtgttgagtattagtgct |
10239920 |
T |
|
| Q |
601 |
gatattgatgatgtttgtagt |
621 |
Q |
| |
|
|| |||||||||||||||||| |
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| T |
10239921 |
gagattgatgatgtttgtagt |
10239941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 4 - 625
Target Start/End: Original strand, 10230544 - 10231165
Alignment:
| Q |
4 |
aagagtttgccgttaaaatcataacggccgattgtttggatatcaccgtttggtgtaactttgatttcataaggaagatctgattctcctaaagcaaaaa |
103 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
10230544 |
aagagtttgccgttgaaatcataacggcccattgtttggatgtcaccgtttggtgttagtttgacttcataaggaagatctgattctcctaaagcaaaaa |
10230643 |
T |
|
| Q |
104 |
gacggttgccaaacagagccaaacttgtgttgatcaatccaatgccgttaattggattatactgaccagttaacacacgtgctacagccacggatccacg |
203 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||| |||||||||||||||| ||| ||||||||||| |||||||| ||||||||| ||||||||||||| |
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|
| T |
10230644 |
gacggttaccaaacagagctaaacttgtgttgaccaatccaatgccgttagatgggttatactgaccggttaacacccgtgctacaaccacggatccacg |
10230743 |
T |
|
| Q |
204 |
tgccgctaaaccaataagcgagttgaaaccagaaaacacgtttgggagaatttggtaaccagcttcgttttcgattttgtatttataggtttgaacgtaa |
303 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| || ||||| |||||||| |||||| |||||||| || ||||||| || ||| |
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|
| T |
10230744 |
tgccgctaaagcaataagcgagttgaaaccagaaaacacgtttgggataagttggtgaccagctttgttttcaattttgtacttgtaggtttttacataa |
10230843 |
T |
|
| Q |
304 |
cggctacatagtgtggcttttccgtttgtgattttaacagcatgaagcatgccgtcaccgtcaaagagatggtaaggtccacgtggaaggaactgagggt |
403 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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|
| T |
10230844 |
cggctacatagtgtggctttcccgtttgagattgtaatggcatgaagcatgccgtcaccgtcaaagagatggtagggtccacgtggaaggaactgtgggt |
10230943 |
T |
|
| Q |
404 |
ttggtccgtttcttatgtaaacaccgttaagtgacggtggaagtgtgcctttaatgactttgcattgtgttggagggagttcgtctaggactggtgcaaa |
503 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||| || ||||| ||||| |||| | |||||||||||||||||||||||||||||||||||||| |
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|
| T |
10230944 |
ttggtccgtttcttatgtaagcaccgtaaagtgacggcgggagtgtacctttgatgattacacattgtgttggagggagttcgtctaggactggtgcaaa |
10231043 |
T |
|
| Q |
504 |
gttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaagatgttgataatgtcatcgagtgtgttgagtattagtgctgat |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10231044 |
gttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaaggtgttgataatgtcatcgagtgtgttgagtattagtgctgat |
10231143 |
T |
|
| Q |
604 |
attgatgatgtttgtagtcttt |
625 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
10231144 |
attgatgatgtttgtagtcttt |
10231165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 5 - 618
Target Start/End: Complemental strand, 10255280 - 10254667
Alignment:
| Q |
5 |
agagtttgccgttaaaatcataacggccgattgtttggatatcaccgtttggtgtaactttgatttcataaggaagatctgattctcctaaagcaaaaag |
104 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10255280 |
agagtttaccgttaaaatcataacggccaattgtttggatatcaccgtttggcgtaagattgatttcataaggaagatctgattctcctaaagcaaaaag |
10255181 |
T |
|
| Q |
105 |
acggttgccaaacagagccaaacttgtgttgatcaatccaatgccgttaattggattatactgaccagttaacacacgtgctacagccacggatccacgt |
204 |
Q |
| |
|
||| |||||||||||||||||||||||| || |||||||||||| ||||| || || |||| || ||||||||| | | || || |||||| |
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|
| T |
10255180 |
tttgttaccaaacagagccaaacttgtgttggctaaaccaatgccgttagaaggattgtattgtccagatatgacacgtgctgcggtgacagagccacgt |
10255081 |
T |
|
| Q |
205 |
gccgctaaaccaataagcgagttgaaaccagaaaacacgtttgggagaatttggtaaccagcttcgttttcgattttgtatttataggtttgaacgtaac |
304 |
Q |
| |
|
|| || || | |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| || ||||||||||||| |
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|
| T |
10255080 |
gcagcagaagctataagcgagttgaaaccagaaaacacgtttgggataagttggtaaccagcttcgttttcgattttgtatttgtaagtttgaacgtaac |
10254981 |
T |
|
| Q |
305 |
ggctacatagtgtggcttttccgtttgtgattttaacagcatgaagcatgccgtcaccgtcaaagagatggtaaggtccacgtggaaggaactgagggtt |
404 |
Q |
| |
|
||||||| ||||| ||||||||||||| |||| ||| || ||||||||||| |||||||| ||||| ||||| |||||||||||||||||||| ||||| |
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|
| T |
10254980 |
ggctacagagtgtagcttttccgtttgagattgtaatggcgtgaagcatgccatcaccgtcgaagaggtggtagggtccacgtggaaggaactgtgggtt |
10254881 |
T |
|
| Q |
405 |
tggtccgtttcttatgtaaacaccgttaagtgacggtggaagtgtgcctttaatgactttgcattgtgttggagggagttcgtctaggactggtgcaaag |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10254880 |
tggtccgtttcttatgtaaacaccgttaagtgacggtggaagtgtgcctttaatgactttgcattgtgttggagggagttcgtcaaggactggtgcaaag |
10254781 |
T |
|
| Q |
505 |
ttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaagatgttgataatgtcatcgagtgtgttgagtattagtgctgata |
604 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||| |||||||| || |||||||| | |
|
|
| T |
10254780 |
ttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaaggtgttgatgatgtcgtcgaatgtgttgaatagtagtgctggga |
10254681 |
T |
|
| Q |
605 |
ttgatgatgtttgt |
618 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
10254680 |
gtgacgatgtttgt |
10254667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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