View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21142_high_6 (Length: 491)
Name: NF21142_high_6
Description: NF21142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21142_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 447; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Complemental strand, 5452863 - 5452389
Alignment:
| Q |
1 |
ttgagttccaaagaaggaaatgatgaacaagggtgtttcactattgttccttattttattgatccaattacatctatccaaaacaacatcattgaagatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5452863 |
ttgagttccaaagaaggaaatgatgaacaagggtgtttcactattgttccttatcttattgatccaattacatctatccaaaacaacatcattgaagata |
5452764 |
T |
|
| Q |
101 |
aagggttgtacctcagaggattgtctcatcaacaatgatttggaatcagaagaattttctatgagttctcatgcagcaagaatgcttttggatttgagtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5452763 |
aagggttgtacctcagaggattgtctcatcaacaatgatttggaatcagaagaattttctatgagttctcatgcagcaagaatgcttttggatttgagtc |
5452664 |
T |
|
| Q |
201 |
aaacacaaacaggtagacatggtaacagcaatggtgctgctgttaagtgtcctacaaatcaagcctatcgtaattgcttgccttctcaaaatggaggtgg |
300 |
Q |
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||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5452663 |
aaacacaaacaggtagaaatggtaacaacaatggtgctgctgttaagtgtcctataaatcaagcctatcgtacttgcttgccttctcaaaatggaggtgg |
5452564 |
T |
|
| Q |
301 |
acctaacaataggtgtgctacttataatagagtttgctaagaaaattgttatatcttgatttccttttcattaattcaagatattggaataatattggac |
400 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5452563 |
acctaacaataggtgtggtacttataatagagtttgctaagaaaattgttatatcttgatttccttttcattaattcaagatattggaataatattggac |
5452464 |
T |
|
| Q |
401 |
atgtttccatttgtgtttattatatatatgtgattgtgtaatcaaattttaatgtgaaaatatgtaattgttatt |
475 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5452463 |
atgtttccatttgtgtttattatatatatgtgattgtgtaatcaaattttaatgtgaaaatatgtaattgttatt |
5452389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 23 - 429
Target Start/End: Complemental strand, 5442092 - 5441683
Alignment:
| Q |
23 |
atgaacaagggtgtttcactattgttccttattttattgatccaatta---catctatccaaaacaacatcattgaagattaagggttgtacctcagagg |
119 |
Q |
| |
|
|||||||||| ||||||||||||| ||||| | ||||||||| |||| |||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5442092 |
atgaacaagg-tgtttcactattgctccttgtcatattgatccgattattacatctaagcaaaacaacatcattgaagataaagggttgtacctcagagg |
5441994 |
T |
|
| Q |
120 |
attgtctcatcaacaatgatttggaatcagaagaattttctatgagttctcatgcagcaagaatgcttttggatttgagtcaaacacaaacaggtagaca |
219 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5441993 |
attgtctcatcaacaatgatttggaatcagaagaattttctatgagttctcatgcagcaagaatgcttttggatttgagtcaaacacaaacaggtagaaa |
5441894 |
T |
|
| Q |
220 |
tggtaacagcaatggtgctgctgttaagtgtcctacaaatcaagcctatcgtaattgcttgccttctcaaaatggaggtggacctaacaataggtgtgct |
319 |
Q |
| |
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|||||||| |||||||||||||||||||||||||| ||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5441893 |
tggtaacaacaatggtgctgctgttaagtgtcctataaaaaaagactatcgtacttgcttgccttctcaaaatggaggtggacctaacaataggtgtggt |
5441794 |
T |
|
| Q |
320 |
acttataatagagtttgctaagaaaattgttatatcttgatttccttttcattaattcaagatattggaataatattggacatgtttccatttgtgttta |
419 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5441793 |
acttataatagagtttgctaagaaaattgttatatcttgatttccttttcattaattcaagatattggaataatattggacatgtttccatttgtgttta |
5441694 |
T |
|
| Q |
420 |
t-tatatatat |
429 |
Q |
| |
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| ||||||||| |
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| T |
5441693 |
tatatatatat |
5441683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 5379357 - 5378974
Alignment:
| Q |
1 |
ttgagttccaaagaaggaaatgatgaacaagggtgtttcactattgttccttattttattgatccaattacatctatccaaaacaacatcattgaagatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||| ||||||||||| |
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|
| T |
5379357 |
ttgagttccaaagaaggaaatgatgaacaagggtgtttcactattgttccatatcttattgatccaattacatctaagcaaaacaacttcattgaagata |
5379258 |
T |
|
| Q |
101 |
aagggttgtacctcagaggattgtctcatcaacaatgatttggaatcagaagaattttctatgagttctcatgcagcaagaatgcttttggatttgagtc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5379257 |
aagggttgtacctcagaggattgtctcatcaacaatgatttggaatcggaagaattttctatgcattctcatgcagcaagaatgcttttggatttgagtc |
5379158 |
T |
|
| Q |
201 |
aaacacaaacaggtagacatggtaacagcaatggtgctgctgttaagtgtcctacaaatcaagcctatcgtaattgcttgccttctcaaaatggaggtgg |
300 |
Q |
| |
|
|||||||||| |||||| |||||||| |||||||| ||||||| ||||||| | | ||||| |||||||| ||||||||||||||||||||||||||| |
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|
| T |
5379157 |
aaacacaaactggtagaactggtaacaacaatggtgttgctgtttagtgtccaatagttcaaggctatcgtacttgcttgccttctcaaaatggaggtgg |
5379058 |
T |
|
| Q |
301 |
acctaacaataggtgtgctacttataatagagtttgctaagaaaattgttatatcttgatttccttttcattaattcaagatattgg |
387 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5379057 |
acctaacaataggtgtggtacttacaatagagtttgctaagaaaa---ttatatcttgatttccttttcattaattcaagatattgg |
5378974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 383 - 475
Target Start/End: Complemental strand, 5376817 - 5376730
Alignment:
| Q |
383 |
attggaataatattggacatgtttccatttgtgtttattatatatatgtgattgtgtaatcaaattttaatgtgaaaatatgtaattgttatt |
475 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5376817 |
attggaataatattggacacgtttccatttgtgtttat---atatatgtgattgtgtaatcaaattttaatgtgaaa--atgtaattgttatt |
5376730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 405 - 461
Target Start/End: Complemental strand, 5450843 - 5450787
Alignment:
| Q |
405 |
ttccatttgtgtttattatatatatgtgattgtgtaatcaaattttaatgtgaaaat |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5450843 |
ttccatttgtgtttattatatatatgtgattgtgtaatcaaattttaatgtgaaaat |
5450787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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