View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21142_high_8 (Length: 383)
Name: NF21142_high_8
Description: NF21142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21142_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 20 - 363
Target Start/End: Original strand, 50821895 - 50822238
Alignment:
| Q |
20 |
catcttgtattggcttgaacccaaaatgctcccacatagccaaccttgtgcgtagtgaaggcaaaataagatggtgaatacctaatcgttttacacagtt |
119 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50821895 |
catcttgtattggctagaacccaaaatgctcccacatagccaaccttgtgcgtagtgaaggcaaaataagatggtgaatacctaatcgttttacacagtt |
50821994 |
T |
|
| Q |
120 |
ctcaatcgagtgaatcaatcttttacacaaaccctgcgatctaaaggattccatggtagccacaatggggatttccacaaacccatttcttgcatgtgcc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50821995 |
ctcaatcgagtgaatcaatcttttacacaaaccctgcgatctaaaggattccatggtagccacaatggggatttccacaaacccatttcttgcatgtgcc |
50822094 |
T |
|
| Q |
220 |
ctaaaaacagcaacactggcacattttccttccttttgaattatacacgtgtaaaaccctccgtgttcaccctttttgttgtaaaccatttgttccacca |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50822095 |
ctaaaaacagcaacactggcacattttccttccttttgaattatacacgtgtaaaaccctccgtgttcaccctttttgttgtaaaccatttgttccacca |
50822194 |
T |
|
| Q |
320 |
tgctttcaattcccggaccaaagccataacataacgtctctgct |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
50822195 |
tgctttcaattcccggaccaaagccataacataacgtttctgct |
50822238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 20 - 363
Target Start/End: Complemental strand, 50853966 - 50853623
Alignment:
| Q |
20 |
catcttgtattggcttgaacccaaaatgctcccacatagccaaccttgtgcgtagtgaaggcaaaataagatggtgaatacctaatcgttttacacagtt |
119 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50853966 |
catcttgtattggctagaacccaaaatgctcccacatagccaaccttgtgcgtagtgaaggcaaaataagatggtgaatacctaatcgttttacacagtt |
50853867 |
T |
|
| Q |
120 |
ctcaatcgagtgaatcaatcttttacacaaaccctgcgatctaaaggattccatggtagccacaatggggatttccacaaacccatttcttgcatgtgcc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50853866 |
ctcaatcgagtgaatcaatcttttacacaaaccctgcgatctaaaggattccatggtagccacaatggggatttccacaaacccatttcttgcatgtgcc |
50853767 |
T |
|
| Q |
220 |
ctaaaaacagcaacactggcacattttccttccttttgaattatacacgtgtaaaaccctccgtgttcaccctttttgttgtaaaccatttgttccacca |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50853766 |
ctaaaaacagcaacactggcacattttccttccttttgaattatacacgtgtaaaaccctccgtgttcaccctttttgttgtaaaccatttgttccacca |
50853667 |
T |
|
| Q |
320 |
tgctttcaattcccggaccaaagccataacataacgtctctgct |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
50853666 |
tgctttcaattcccggaccaaagccataacataacgtttctgct |
50853623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University