View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21142_high_9 (Length: 320)
Name: NF21142_high_9
Description: NF21142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21142_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 10 - 279
Target Start/End: Complemental strand, 44093502 - 44093233
Alignment:
| Q |
10 |
tttgtaattatgccaatggacaatggtagattaactactgcggacaaaaagagaccatgtattctgggtttggttgtaaacaatggttatccccaatgtg |
109 |
Q |
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| T |
44093502 |
tttgtaattatgccaatggacaatggtagattaactactgcggacaaaaagagaccatgtattctgggtttggctgtaaacaatggttatccccaatgtg |
44093403 |
T |
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| Q |
110 |
gccatgtagacggacaaaacgagcagatttcacatttgaaggataccgctggcagccagaaaattgtgatgtgccagagtttgtttgacccatctgggtt |
209 |
Q |
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| T |
44093402 |
gccatgtagacggacaaaacgagcagatttcacatttgaaggataccgctggcagccagaaaattgtgatgtgccagagtttgtttgacgcatctgggtt |
44093303 |
T |
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| Q |
210 |
cttgaggaagtaggtataatcctttgttcttcatttaatcatgtatgtagttgttacgtttattcactga |
279 |
Q |
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| T |
44093302 |
cttgaggaagtaggtataatcctttgttcttcatttaatcatgtatgtagttgttacgtttattcactga |
44093233 |
T |
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Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 69 - 234
Target Start/End: Complemental strand, 39279203 - 39279042
Alignment:
| Q |
69 |
tattctgggtttggttgtaaacaatggttatccccaatgtggccatgtagacggacaaaacgagcagatttcacatttgaaggataccgctggcagccag |
168 |
Q |
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| T |
39279203 |
tattctggtttcggctgtaagcagtggttatcatcaatgtggtcatgtagaatgacacaacgaccaaatttttcatttgagggataccgctggcagccaa |
39279104 |
T |
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| Q |
169 |
aaaattgtgatgtgccagagtttgtttgacccatctgggttcttgaggaagtaggtataatccttt |
234 |
Q |
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| T |
39279103 |
agaattgtgatatgcaaga----gtttgaccgatctaagttcttgagaaagtaggtataattcttt |
39279042 |
T |
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