View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21142_low_10 (Length: 270)
Name: NF21142_low_10
Description: NF21142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21142_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 21 - 230
Target Start/End: Original strand, 30886640 - 30886849
Alignment:
| Q |
21 |
aatgtcaattagaaagaatgattgttcacaaatacaaatcatttttcctttgtacaaacataaaaataactataaaatttccattacatgtataaattat |
120 |
Q |
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| T |
30886640 |
aatgtcaattagaaagaatgattgttcacaaatacagatcatttttcctttgtacaaacataagaataactataaaatttctattacatgtatatttttt |
30886739 |
T |
|
| Q |
121 |
tattttgtacaaacataagacataactataaaatttcgattacatgtaaaagtcccatgcattaagtgtttagaaaaatacaaactgaaataagatgaca |
220 |
Q |
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| T |
30886740 |
ttttctgtacaaacataatacataactacaaaatttcgattacatgtaaaagtcccatgcattaagtgtttagaaaaatacaaactgaaataagatgaca |
30886839 |
T |
|
| Q |
221 |
aatggactat |
230 |
Q |
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|||||||||| |
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| T |
30886840 |
aatggactat |
30886849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 12524277 - 12524322
Alignment:
| Q |
126 |
tgtacaaacataagacataactataaaatttcgattacatgtaaaa |
171 |
Q |
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| T |
12524277 |
tgtacaaacatacatcataactataaaatttctattacatgtaaaa |
12524322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 21 - 260
Target Start/End: Original strand, 22848823 - 22849058
Alignment:
| Q |
21 |
aatgtcaattagaaagaatgattgttcacaaatacaaatcatttttcctttgtacaaacataaaaataactataaaatttccattacatgtataaattat |
120 |
Q |
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| T |
22848823 |
aatgtcaattagaaagaatgattgttcacaaatacaaatcatttttcctttgtacaaacataagaataactataaaatttctattacatgtatatatatt |
22848922 |
T |
|
| Q |
121 |
tattt-tgtacaaacataagacataactataaaatttcgattacatgtaaaagtcccatgcattaagtgtttagaaaaatacaaactgaaataagatgac |
219 |
Q |
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| ||| ||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22848923 |
tttttctgtacaaacataatacataactacaaaatttcaattacatgtaaaagtcccatgcattaagtgtttagaaaaatacaaactgaaataagatgac |
22849022 |
T |
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| Q |
220 |
aaatggactataaacacatgtacagtagaaattcaattaca |
260 |
Q |
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| T |
22849023 |
aaatggactatcaa-ac----acagtagaaattcaattaca |
22849058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 16399533 - 16399324
Alignment:
| Q |
19 |
ggaatgtcaattagaaagaatgattgttcacaaatacaaatcatttttcctttgtacaaacataaaaataactataaaatttccattacatgtataaatt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| |
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| T |
16399533 |
ggaatgtcaattagaaagaatgattgttcacaaatacaaatcatttttcctttgtataaacataa---taactataaaatttccattaaatgtataaatt |
16399437 |
T |
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| Q |
119 |
attatttt-gtacaaacataagacataactataaaatttcgattacatgtaaaagtcccatgcattaagtgtttagaaaaatacaaactgaaataagatg |
217 |
Q |
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||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
16399436 |
attttttttgtacaaacataagacataactacaaaatttcgattacatgtaaaagtctcatgcattaagtctttagaaaaatacaaactgaaataagatg |
16399337 |
T |
|
| Q |
218 |
acaaatggactat |
230 |
Q |
| |
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||||||||||||| |
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| T |
16399336 |
acaaatggactat |
16399324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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