View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21142_low_12 (Length: 242)
Name: NF21142_low_12
Description: NF21142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21142_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 4006765 - 4006980
Alignment:
| Q |
9 |
gacatcatcaaaataataccaacgccccaaagggcttgaacgccaagcagccaagacaactacaaatgataaaa--atacgaaattgatgcaacactagc |
106 |
Q |
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| T |
4006765 |
gacatcaacaaaataataccaacgccccaaagggcttgaacgccaagcagccaagacaactacaaatgataaaaaaatacgaaattgatgcaacactagc |
4006864 |
T |
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| Q |
107 |
agtccagcaagcaagatacaacgtcaaacggatcccaaaatgccacaacactgcagcagaactagaacatcagagcaggaccggaacagctgaaggtcag |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4006865 |
agtccagcaagcaagatacaacgtcaaacggatcccaaaatgccacaacactgcagcagaactagaacatcagagcaggactggaacagctgaaggtcag |
4006964 |
T |
|
| Q |
207 |
aagaaagcaagagctg |
222 |
Q |
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|||||||||| ||||| |
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| T |
4006965 |
aagaaagcaacagctg |
4006980 |
T |
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