View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21142_low_14 (Length: 227)
Name: NF21142_low_14
Description: NF21142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21142_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 6e-67; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 22973486 - 22973675
Alignment:
| Q |
19 |
aggttagagttaaaggccttgatgcaaatattacatcatgagttttcattatttcctttgcatattctgctgatgaaacaatagtaaagaaaacttcacc |
118 |
Q |
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||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| || ||||||||||| ||||||||||| |
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| T |
22973486 |
aggttagtgttaaaggccttgacgcaaatataacatcatgagttttcattatttccttagcatattctgctgaggatacaatagtaaataaaacttcacc |
22973585 |
T |
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| Q |
119 |
aagttgaagatgcattaaagggccatannnnnnngacaattctcttaattttctatgtggttgagagccaataagattatgtatgtttcc |
208 |
Q |
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| T |
22973586 |
aagttgaagatgcattaaagcaccatattttgttgacaattctcttaattttctatgtggtggagagccaataagattatgtatgtttcc |
22973675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 31 - 212
Target Start/End: Original strand, 22947660 - 22947841
Alignment:
| Q |
31 |
aaggccttgatgcaaatattacatcatgagttttcattatttcctttgcatattctgctgatgaaacaatagtaaagaaaacttcaccaagttgaagatg |
130 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||| | || || |||||||||||||||||||| |
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| T |
22947660 |
aaggccttgatgaaaatattacatcatgagttttcattatttccatagcatattctgctgaggaaacaataatgaaaaagacttcaccaagttgaagatg |
22947759 |
T |
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| Q |
131 |
cattaaagggccatannnnnnngacaattctcttaattttctatgtggttgagagccaataagattatgtatgtttcctatg |
212 |
Q |
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| T |
22947760 |
cattaaagggccatatttatttgacaattctcttaattttctatgtggtggagagccaataagattatgtatgtttcctatg |
22947841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 22997652 - 22997815
Alignment:
| Q |
19 |
aggttagagttaaaggccttgatgcaaatattacatcatgagttttcattatttcctttgcatattctgctgatgaaacaatagtaaagaaaacttcacc |
118 |
Q |
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||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||| ||| | | |||||||| |
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| T |
22997652 |
aggttagagttaaaggccttgatacaaatataacatcatgagttttcattatttccttagcatattctgctgaggaaacaataataaggtagacttcacc |
22997751 |
T |
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| Q |
119 |
aagttgaagatgcattaaagggccatannnnnnngacaattctcttaattttctatgtggttga |
182 |
Q |
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| T |
22997752 |
aagttgaagatgcattaaagtgccatatttttttgacaattctcttaattttcaatgttgttga |
22997815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 22943049 - 22943242
Alignment:
| Q |
18 |
aaggttagagttaaaggccttgatgcaaatattacatcatgagttttcattatttcctttgcatattctgctgatgaaacaatagtaaagaaaacttcac |
117 |
Q |
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||||||||| | |||||||||||| |||| | |||||||||||||||||||| ||||| |||||||| ||||| |||||||| ||||| | ||||||| |
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| T |
22943049 |
aaggttagactataaggccttgatgaaaatgtaacatcatgagttttcattatctccttagcatattcagctgaggaaacaattataaagcagacttcac |
22943148 |
T |
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| Q |
118 |
caagttgaagatgcattaaagggccatannnnnnngacaattctcttaattttctatgtggttgagagccaataagattatgtatgtttcctat |
211 |
Q |
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||||||||||||||||||||||||||| |||| ||||| ||||||||||||| || ||||||||| |||||||| ||||||||||| |
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| T |
22943149 |
caagttgaagatgcattaaagggccatgaatttttgacagttctcctaattttctatgtagtggagagccaaatagattatggatgtttcctat |
22943242 |
T |
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