View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21142_low_2 (Length: 863)
Name: NF21142_low_2
Description: NF21142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21142_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 491; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 11 - 572
Target Start/End: Complemental strand, 47258014 - 47257444
Alignment:
| Q |
11 |
catcatcatgtgggactcacatgctgagaaactctgcattcatcatgtgaaatttctccttcttagcagaagtatattattggaatctagtgatctcaac |
110 |
Q |
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| T |
47258014 |
catcatcatgtgggactcacatgctgagaaactctgcattcatcatgtgaaatttctccttcttagcagaagtatattattggaatctagtgatctcaac |
47257915 |
T |
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| Q |
111 |
cacaatgcaatgcatgcacaatccaatgattatacaagtcagaatttacattctaataatttctcagatccatccaaattaacacctattctcnnnnnnn |
210 |
Q |
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| T |
47257914 |
cacaatgcaatgcatgcacaatccaatgattatacaagtcagaatttacattctaataatatctcagatccatccaaattaacacctattctcttttttt |
47257815 |
T |
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| Q |
211 |
ngggtacaaaattaacacctattctacaaatccaacattaacatagtttgttgaaataattaaaaacaaat---------taacaaaataaacaacctta |
301 |
Q |
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| T |
47257814 |
ttggtacaaaattaacacctattctacaaatccaacattaacatagtttgttgaaataattaaaaacaaataaaacaaattaacaaaataaacaacctta |
47257715 |
T |
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| Q |
302 |
tttcaaaaccccgaggatcaaacttgaactgcataatctttgaactttgtttgaaatttacctctctaatattttgcccttcttgagtggaaatagtgga |
401 |
Q |
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| T |
47257714 |
tttcaaaaccctgaggatcaaacttgaactgcataatctttgaactttgtttgaaatttacctctctaatattttgcccttcttgagtggaaatagtgga |
47257615 |
T |
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| Q |
402 |
ggcaaagcactgtttttcatctgtgtacaaattggcacattaatcattggtctaattctaatagtagctgatcttgttctctccaaccctttctttatcc |
501 |
Q |
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| T |
47257614 |
ggcaaagcactgtttttcatctgtgtacaaattggcacattaatcattggtctaattctaatagtagctgatcttgttctctccaaccctttctttatcc |
47257515 |
T |
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| Q |
502 |
tcttcacatgctgattctctttgtttttagaaccttcttgagaagctacatcgccgagcgaactcccattc |
572 |
Q |
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| T |
47257514 |
tcttcacatgctgattctctttgtttttagaaccttctttagcagctacatcaccgagcgaactcccattc |
47257444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 616 - 848
Target Start/End: Complemental strand, 47257400 - 47257168
Alignment:
| Q |
616 |
ctctttgtttcttcaaccttagtaactctttccataaaacagtgcactttggtggccttggtgatggatcatcatccacaaaccaatttactctactatt |
715 |
Q |
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| T |
47257400 |
ctctttgtttcttcaaccttagtaactctttccataaaacagtgcactttggtggccttggtgatggatcatcatccacaaaccaatttactctactatt |
47257301 |
T |
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| Q |
716 |
attattatcttctttgttgtccactaccacctcaatcacttcctcctcctcttcttctttgaggttgatcttgttgagtttctctagatgttgcatctgc |
815 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47257300 |
attattatcttctttgttgtccactaccacctcaatcacttcctcctcttcttcttctttgaggttgatcttgttgagtttctctagatgttgcatctgc |
47257201 |
T |
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| Q |
816 |
caaaagggaaggatttttccttcaaagaaaagt |
848 |
Q |
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| T |
47257200 |
caaaagggaaggatttttccttcaaagaaaagt |
47257168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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