View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21142_low_4 (Length: 503)

Name: NF21142_low_4
Description: NF21142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21142_low_4
NF21142_low_4
[»] chr3 (4 HSPs)
chr3 (1-493)||(24830004-24830507)
chr3 (8-371)||(23246428-23246790)
chr3 (422-493)||(23248273-23248350)
chr3 (262-371)||(36060268-36060377)
[»] chr6 (5 HSPs)
chr6 (246-374)||(9193904-9194029)
chr6 (336-371)||(31322127-31322162)
chr6 (331-377)||(1912524-1912570)
chr6 (316-367)||(14933031-14933079)
chr6 (331-371)||(24769312-24769352)
[»] chr5 (2 HSPs)
chr5 (331-371)||(34114370-34114410)
chr5 (262-378)||(40213841-40213953)
[»] chr8 (1 HSPs)
chr8 (253-366)||(16690915-16691025)
[»] chr2 (1 HSPs)
chr2 (331-378)||(11530025-11530072)
[»] chr1 (4 HSPs)
chr1 (262-371)||(7347696-7347802)
chr1 (333-371)||(32868273-32868311)
chr1 (331-371)||(17209210-17209250)
chr1 (315-369)||(33651660-33651711)
[»] chr4 (3 HSPs)
chr4 (333-371)||(20709976-20710014)
chr4 (331-371)||(26275558-26275598)
chr4 (251-327)||(39032501-39032577)


Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Complemental strand, 24830507 - 24830004
Alignment:
Q  1 aggcactctgagaggagtgttagacacatgtgcaatgttgtttccaaggagttcctggaaatttgcgggatagaaattctacctggtttcaaatggagat 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  24830507 aggcactgtgagaggagtgttagacacatgtgcaatgttgtttccaaggagttcctggaaatttgcaggatggaaattctacctggtttcaaatggagat 24830408  T
Q  101 ctagaaaagaggtggttgattggctgacgtcgatgctatcaaagcagcatctccgggaagatagaagtggtaagttgatatttcgtatttctgatctgat 200  Q
    |||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24830407 ctagaagagaggtggttgattggccgacatcgatgctatcaaagcagcatctccgggaagatagaagtggtaagttgatatttcgtatttctgatctgat 24830308  T
Q  201 cagttgttgccatatataactgctttgttcattgcagtgttgtctatcgtggaaaacaacagtttgttcaaattttgctacacaagagtactatagcgcc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24830307 cagttgttgccatatataactgctttgttcattgcagtgttgtctatcacggaaaacaacagtttgttcaaattttgctacacaagagtgctatagcgcc 24830208  T
Q  301 gatatagcctttagttgacaacattttatagtactaaatagtgtattgtagaacaatagcgatttgttcaactttcgcaatgttgtagcactaaagcgcc 400  Q
    ||||||||||||| ||||||||||||||   |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||    
T  24830207 gatatagcctttatttgacaacatttta---tactaaatagtgtattgtagaacaatagcgattttttcaactttcgcaatgttgtagcactaaagtgcc 24830111  T
Q  401 actataaatgtgacttaaccttggtatccgagattgttggttcaggtgtacaatt--------------gtagctcggaaacaactgaaagtgcaatatg 486  Q
    | |||||||||||||||||||||| ||| ||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||    
T  24830110 agtataaatgtgacttaaccttggcatctgagattgttggttcaggtgtacaattgtacaggactacaggtagctcggaaacaactgaaagtgcaatatg 24830011  T
Q  487 atgatgt 493  Q
    |||||||    
T  24830010 atgatgt 24830004  T

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Target: chr3; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 8 - 371
Target Start/End: Original strand, 23246428 - 23246790
Alignment:
Q  8 ctgagaggagtgttagacacatgtgcaatgttgtttccaaggagttcctggaaatttgcgggatagaaattctacctggtttcaaatggagatctagaaa 107  Q
    |||||||||||||||||||||||||| ||||| || |  |||||||| |||||||||| || || ||||||| ||||||||||||||||||||||||||     
T  23246428 ctgagaggagtgttagacacatgtgctatgttattgcagaggagttcttggaaatttgtggaatggaaattccacctggtttcaaatggagatctagaag 23246527  T
Q  108 agaggtggttgattggctgacgtcgatgctatcaaagcagcatctccgggaagatagaagtggtaagttgatatttcgtattt---ctgatctgatcagt 204  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||   |||||||||||||||||||| ||| |||| |||||   ||||||  ||||||    
T  23246528 agaggtggttgattggctgacctcgatgttatcaaagcagcatctggaggaagatagaagtggtaagtcgatgtttcttatttctactgatcgaatcagt 23246627  T
Q  205 tgttgccatatataactgctttgttcattgcagtgttgtctatcgtggaaaacaacagtttgttcaaattttgctacacaagagtactatagcgccgata 304  Q
    ||| ||||||||||| |   ||| |||||| ||||||||| | |||| |||| |||||||| |||||||| |||||| ||  |||  ||||| | || |     
T  23246628 tgtcgccatatataattatgttgatcattgtagtgttgtcaagcgtgaaaaagaacagtttattcaaattctgctacgcatcagtgttatagtg-cgctg 23246726  T
Q  305 tagcctttagttgacaacattttatagtactaaatagtgtattgtagaacaatagcgatttgttcaa 371  Q
    |||||| || ||| || |||||||    ||||||||||||||||| ||||||| | |||||||||||    
T  23246727 tagcctctatttgccatcatttta---cactaaatagtgtattgtggaacaatggtgatttgttcaa 23246790  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 493
Target Start/End: Original strand, 23248273 - 23248350
Alignment:
Q  422 tggtatccgagattgttggttcaggtgtacaattgta------gctcggaaacaactgaaagtgcaatatgatgatgt 493  Q
    |||||||||||  || |||||||||||||||||||||      |||||||||||| ||||||| ||||||||||||||    
T  23248273 tggtatccgaggctgctggttcaggtgtacaattgtacaggtagctcggaaacaattgaaagtccaatatgatgatgt 23248350  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 262 - 371
Target Start/End: Complemental strand, 36060377 - 36060268
Alignment:
Q  262 gtttgttcaaattttgctacacaagagtactatagcgccgatata---gcctttagttgacaacattttatagtactaaatagtgtattgtagaacaata 358  Q
    |||||||||||||||||||  ||| |||||||||||||| |||||   |||| || || |||| |||||   ||||||||||  ||||||| ||||||      
T  36060377 gtttgttcaaattttgctatgcaacagtactatagcgcctatatagccgcctctatttcacaatatttt---gtactaaataacgtattgtggaacaaat 36060281  T
Q  359 gcgatttgttcaa 371  Q
    |||||||||||||    
T  36060280 gcgatttgttcaa 36060268  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 246 - 374
Target Start/End: Original strand, 9193904 - 9194029
Alignment:
Q  246 atcgtggaaaacaacagtttgttcaaattttgctacacaagagtactatagcgccgatatagcctttagttgacaacattttatagtactaaatagtgta 345  Q
    |||||||||||||||| |||||||||||| ||||||  || |||||||||| ||||||||||||  || |  ||||||||||   |||| ||||| ||||    
T  9193904 atcgtggaaaacaacaatttgttcaaattctgctactgaacagtactatagagccgatatagccactattgaacaacatttt---gtaccaaataatgta 9194000  T
Q  346 ttgtagaacaatagcgatttgttcaactt 374  Q
    |||| ||| || || ||||||||||||||    
T  9194001 ttgtggaagaacagtgatttgttcaactt 9194029  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 371
Target Start/End: Complemental strand, 31322162 - 31322127
Alignment:
Q  336 aaatagtgtattgtagaacaatagcgatttgttcaa 371  Q
    ||||||||||||||||||||||| ||||||||||||    
T  31322162 aaatagtgtattgtagaacaataacgatttgttcaa 31322127  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 377
Target Start/End: Original strand, 1912524 - 1912570
Alignment:
Q  331 gtactaaatagtgtattgtagaacaatagcgatttgttcaactttcg 377  Q
    |||||||||||| ||| | |||||||||||||||||||||| |||||    
T  1912524 gtactaaatagtatatcgcagaacaatagcgatttgttcaaatttcg 1912570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 367
Target Start/End: Original strand, 14933031 - 14933079
Alignment:
Q  316 tgacaacattttatagtactaaatagtgtattgtagaacaatagcgatttgt 367  Q
    ||||||||||||   |||||||||||||||||| |||||||||||| |||||    
T  14933031 tgacaacatttt---gtactaaatagtgtattgcagaacaatagcggtttgt 14933079  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 331 - 371
Target Start/End: Complemental strand, 24769352 - 24769312
Alignment:
Q  331 gtactaaatagtgtattgtagaacaatagcgatttgttcaa 371  Q
    |||||||||||||||||| |||||||||  |||||||||||    
T  24769352 gtactaaatagtgtattgcagaacaataatgatttgttcaa 24769312  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 371
Target Start/End: Complemental strand, 34114410 - 34114370
Alignment:
Q  331 gtactaaatagtgtattgtagaacaatagcgatttgttcaa 371  Q
    ||||||||||| ||||||| |||||||||||||||||||||    
T  34114410 gtactaaatagcgtattgtggaacaatagcgatttgttcaa 34114370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 378
Target Start/End: Original strand, 40213841 - 40213953
Alignment:
Q  262 gtttgttcaaattttgctacacaagagtactatagcgccgatatagcctttagttgacaacattttatagtactaaatagtgtattgtagaacaatagcg 361  Q
    ||||||| |||||||||||| ||| ||| ||||||| || |||||||    | |||||||||||||   |||||| |||| ||||||  ||||||||| |    
T  40213841 gtttgtttaaattttgctacgcaacagtgctatagcaccaatatagctaccatttgacaacatttt---gtactacatagcgtattg-cgaacaatagtg 40213936  T
Q  362 atttgttcaactttcgc 378  Q
    |||||||||| ||||||    
T  40213937 atttgttcaattttcgc 40213953  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 366
Target Start/End: Original strand, 16690915 - 16691025
Alignment:
Q  253 aaaacaacagtttgttcaaattttgctacacaagagtactatagcgccgatatagcctttagttgacaacattttatagtactaaatagtgtattgtaga 352  Q
    |||| |||||||||||||||||| ||| | ||| ||| |||||| |||| |||| ||| || |||| ||||||||   |||||||| ||||| |   |||    
T  16690915 aaaataacagtttgttcaaatttcgcttcgcaacagtgctatagtgccgttataccctctatttgaaaacatttt---gtactaaacagtgtgtaacaga 16691011  T
Q  353 acaatagcgatttg 366  Q
    ||||||||||||||    
T  16691012 acaatagcgatttg 16691025  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 378
Target Start/End: Complemental strand, 11530072 - 11530025
Alignment:
Q  331 gtactaaatagtgtattgtagaacaatagcgatttgttcaactttcgc 378  Q
    |||||||||||||||| | |||||||||| ||||||||||| ||||||    
T  11530072 gtactaaatagtgtatcgcagaacaatagtgatttgttcaaatttcgc 11530025  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 371
Target Start/End: Complemental strand, 7347802 - 7347696
Alignment:
Q  262 gtttgttcaaattttgctacacaagagtactatagcgccgatatagcctttagttgacaacattttatagtactaaatagtgtattgtagaacaatagcg 361  Q
    |||||||||||||    ||| ||| ||||||||||||||  |||||||  || || |||| |||||   |||||||||||||||||| | |||||||||     
T  7347802 gtttgttcaaattacattacgcaacagtactatagcgcctctatagccgctatttcacaatatttt---gtactaaatagtgtattgcaaaacaatagca 7347706  T
Q  362 atttgttcaa 371  Q
    ||||||||||    
T  7347705 atttgttcaa 7347696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 371
Target Start/End: Complemental strand, 32868311 - 32868273
Alignment:
Q  333 actaaatagtgtattgtagaacaatagcgatttgttcaa 371  Q
    |||||||||| ||||| ||||||||||||||||||||||    
T  32868311 actaaatagtatattgcagaacaatagcgatttgttcaa 32868273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 331 - 371
Target Start/End: Complemental strand, 17209250 - 17209210
Alignment:
Q  331 gtactaaatagtgtattgtagaacaatagcgatttgttcaa 371  Q
    |||||||||| ||||| |||||||||||| |||||||||||    
T  17209250 gtactaaataatgtatagtagaacaatagtgatttgttcaa 17209210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 369
Target Start/End: Complemental strand, 33651711 - 33651660
Alignment:
Q  315 ttgacaacattttatagtactaaatagtgtattgtagaacaatagcgatttgttc 369  Q
    ||||||||||||||||   ||||||||  ||||||||||||||| ||||||||||    
T  33651711 ttgacaacattttata---ctaaatagcatattgtagaacaataacgatttgttc 33651660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 371
Target Start/End: Original strand, 20709976 - 20710014
Alignment:
Q  333 actaaatagtgtattgtagaacaatagcgatttgttcaa 371  Q
    ||||||||| |||||| ||||||||||||||||||||||    
T  20709976 actaaatagcgtattgcagaacaatagcgatttgttcaa 20710014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 331 - 371
Target Start/End: Original strand, 26275558 - 26275598
Alignment:
Q  331 gtactaaatagtgtattgtagaacaatagcgatttgttcaa 371  Q
    ||||||||||| ||||| | |||||||||||||||||||||    
T  26275558 gtactaaatagcgtattttggaacaatagcgatttgttcaa 26275598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 39032501 - 39032577
Alignment:
Q  251 ggaaaacaacagtttgttcaaattttgctacacaagagtactatagcgccgatatagcctttagttgacaacatttt 327  Q
    |||||| ||||||||||| ||||| |||||| ||| ||| ||||||||||  | ||||| ||| | |||||||||||    
T  39032501 ggaaaataacagtttgttgaaattctgctacgcaatagtgctatagcgcccctgtagccattattcgacaacatttt 39032577  T

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