View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21142_low_5 (Length: 499)
Name: NF21142_low_5
Description: NF21142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21142_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 5e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 286 - 480
Target Start/End: Complemental strand, 44093203 - 44093005
Alignment:
| Q |
286 |
agtatgcatgacaaaacaattgcattcattgggtagacaacagtttcaatctatgatgtgtatggtcactggtggacttgagaggccagaagttgaaaat |
385 |
Q |
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| T |
44093203 |
agtatgcatgacaaaacaattgcattcgttgggtagacaacagtttcaatctatgatgtgtatggtcactggtggacttgagaggccagaagttgaaaat |
44093104 |
T |
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| Q |
386 |
gttggatggtaatatggtcttgtaaaagcacgtggagctattattcctgacg----gatgggcttaccgatttccaaaaaccaatacgaccatcttata |
480 |
Q |
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| T |
44093103 |
gttggatggtaatatggtcttgtaaaagcacgtggagctattattcctgacggatcgatgggcttacagatttccaaaaaccaatatgaccatcttata |
44093005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 44093271 - 44093233
Alignment:
| Q |
18 |
catttaatcatgtatgtagttgttacgtttattcactga |
56 |
Q |
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| T |
44093271 |
catttaatcatgtatgtagttgttacgtttattcactga |
44093233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 309 - 487
Target Start/End: Complemental strand, 39278738 - 39278560
Alignment:
| Q |
309 |
attcattgggtagacaacagtttcaatctatgatgtgtatggtcactggtggacttgagaggccagaagttgaaaatgttggatggtaatatggtcttgt |
408 |
Q |
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| T |
39278738 |
attcattgggccgtcaacaatttcaatctctgatgtgtatggccactggtggagaagagagtccagaagttcaaaatgtgggatgggagtatgatcttgt |
39278639 |
T |
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| Q |
409 |
aaaagcacgtggagctattattcctgacggatgggcttaccgatttccaaaaaccaatacgaccatcttatattcttgg |
487 |
Q |
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| T |
39278638 |
aaaacaccgcggagctatacgtcctgatggctgggcttacaggtttaccaagactaataccaccatcttatattattgg |
39278560 |
T |
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