View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21142_low_7 (Length: 448)
Name: NF21142_low_7
Description: NF21142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21142_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 11 - 426
Target Start/End: Complemental strand, 46762192 - 46761763
Alignment:
| Q |
11 |
cacagatatcgggcctaacaatttcggcatttgcgacttatacactgctctcagtcttactatatttatagtattttatagaatataaattgaacaaatc |
110 |
Q |
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| T |
46762192 |
cacagatatccggcctaacaatttcggcatttgcgacttatacactgctctcagtcttactatatttatagtattttatagaatataaatttaacaaatc |
46762093 |
T |
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| Q |
111 |
cgaccgttgaaccatccgatattgacatgatgatcatttacgccaaatctcagaaaaatggaacaatcatagggttgtaaactgaaaattggtattaact |
210 |
Q |
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| T |
46762092 |
cgacagttgaaccatccgatattgacatgatgatcatttacgccaaatctcagaaaaatggaataatcatagggttgtaaactgaaaattggtattaact |
46761993 |
T |
|
| Q |
211 |
cttattttaaactacattatacagttaaatgaagttgttggatgatgaagtatcaataattttttaaataatatgaaatttaacatatgatctatttaat |
310 |
Q |
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| T |
46761992 |
cttattttaaactacattatacagttaaatgaagttgttggatgatgaagtatcaataattttttaaataatatgaaatttaacatatgatctatttaat |
46761893 |
T |
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| Q |
311 |
tagaaatttgaattaaatgaatagatttattgaattcataatctccnnnnnnnnngaaaatatttaaatgga----------------gtagttgaggcg |
394 |
Q |
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| T |
46761892 |
tagaaatttgaattaaatgaatagatttattgaattcataatctcc--aaaaaaagaaaatatttaaatggagtagcatgaaaatgatgtagttgaggcg |
46761795 |
T |
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| Q |
395 |
atgagaagcagttaaacaacaaacctgtgcct |
426 |
Q |
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| T |
46761794 |
atgagaagcagttaaacaacaaacctgtgcct |
46761763 |
T |
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