View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21143_high_5 (Length: 297)

Name: NF21143_high_5
Description: NF21143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21143_high_5
NF21143_high_5
[»] chr8 (3 HSPs)
chr8 (3-280)||(26461982-26462260)
chr8 (27-84)||(8108263-8108320)
chr8 (27-103)||(22209439-22209515)
[»] chr7 (1 HSPs)
chr7 (27-111)||(40065772-40065856)
[»] chr2 (1 HSPs)
chr2 (35-86)||(29866443-29866494)
[»] chr3 (1 HSPs)
chr3 (35-109)||(25958464-25958538)
[»] chr4 (3 HSPs)
chr4 (27-103)||(50774994-50775070)
chr4 (35-108)||(2137227-2137300)
chr4 (32-103)||(42627941-42628012)
[»] chr1 (2 HSPs)
chr1 (33-104)||(34652463-34652534)
chr1 (27-107)||(36621966-36622046)
[»] scaffold0178 (1 HSPs)
scaffold0178 (33-86)||(15908-15961)


Alignment Details
Target: chr8 (Bit Score: 170; Significance: 3e-91; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 3 - 280
Target Start/End: Original strand, 26461982 - 26462260
Alignment:
Q  3 ttttaaattagacaatttttagataaaatgttaaatattttgattttcaatatattgaacacatacatttttataaatacttataacttatgatttttaa 102  Q
    |||||||||| |||||||||  | ||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26461982 ttttaaattaaacaattttttaaaaaaatgttaaatattttgatttttaatgtattgaacacatatatttttataaatacttataacttatgatttttaa 26462081  T
Q  103 agagtattcaaatgcactcgttgatatttttctaataatttactcnnnnnnngtattttcctaataataataaaactacacgcatctaaaattttagaaa 202  Q
    ||||||||||||||||||||||  |||||||||||||||||||||       |||||||||| ||||||||||||||  || |||||||||||||||| |    
T  26462082 agagtattcaaatgcactcgttagtatttttctaataatttactcaaaaaaagtattttccttataataataaaactgtacccatctaaaattttagaga 26462181  T
Q  203 aattgtcaatccactcatcatcactgctgcctctctgattata-caccacatgatgttattctctcttacaatgtattc 280  Q
      ||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||| ||||| ||||||||||||||    
T  26462182 cgttgtcaatccactcatcatcactgctgcctctctgatgataccaccgcatgatgttgttctcccttacaatgtattc 26462260  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 8108320 - 8108263
Alignment:
Q  27 aaaatgttaaatattttgattttcaatatattgaacacatacatttttataaatactt 84  Q
    |||| ||||||||||||||||||  |||||||||  ||| ||||||| ||||||||||    
T  8108320 aaaaagttaaatattttgattttggatatattgattacacacattttcataaatactt 8108263  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 22209439 - 22209515
Alignment:
Q  27 aaaatgttaaatattttgattttcaatatattgaacacatacatttttataaatacttataacttatgatttttaaa 103  Q
    |||| ||||||||||||||||| ||| | |||||  ||||| ||||| |||||||||||  | ||||| ||||||||    
T  22209439 aaaaagttaaatattttgatttccaagacattgattacatatattttcataaatacttactatttatggtttttaaa 22209515  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 40065856 - 40065772
Alignment:
Q  27 aaaatgttaaatattttgattttcaatatattgaacacatacatttttataaatacttataacttatgatttttaaagagtattc 111  Q
    |||| ||||||||||||||||||||||| || ||| ||||  |||||||||||||||||  |||||||||| ||||| |||||||    
T  40065856 aaaaagttaaatattttgattttcaatacatcgaatacatgtatttttataaatacttaccacttatgattcttaaatagtattc 40065772  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 86
Target Start/End: Complemental strand, 29866494 - 29866443
Alignment:
Q  35 aaatattttgattttcaatatattgaacacatacatttttataaatacttat 86  Q
    ||||||||||||||| ||||||||||| ||||||||||| ||||||||||||    
T  29866494 aaatattttgattttaaatatattgaatacatacattttcataaatacttat 29866443  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 25958464 - 25958538
Alignment:
Q  35 aaatattttgattttcaatatattgaacacatacatttttataaatacttataacttatgatttttaaagagtat 109  Q
    |||||||||||||| ||||||||||| |||| ||||||||| |||||||||| | ||||| || ||||| |||||    
T  25958464 aaatattttgatttacaatatattgatcacacacatttttaaaaatacttatcatttatggttcttaaaaagtat 25958538  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 50774994 - 50775070
Alignment:
Q  27 aaaatgttaaatattttgattttcaatatattgaacacatacatttttataaatacttataacttatgatttttaaa 103  Q
    |||| ||||||||||||||||||||| |||||||  ||| | ||||| ||||||| |||| |||||||||| |||||    
T  50774994 aaaaagttaaatattttgattttcaacatattgattacacatattttcataaatatttattacttatgattcttaaa 50775070  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 2137227 - 2137300
Alignment:
Q  35 aaatattttgattttcaatatattgaacacatacatttttataaatacttataacttatgatttttaaagagta 108  Q
    ||||||||||||||  ||||||||||  ||| | ||||| |||||||||||| |||||||||| ||||| ||||    
T  2137227 aaatattttgatttataatatattgattacacatattttcataaatacttattacttatgattcttaaacagta 2137300  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 42628012 - 42627941
Alignment:
Q  32 gttaaatattttgattttcaatatattgaacacatacatttttataaatacttataacttatgatttttaaa 103  Q
    ||||||||||||||||||||||| |||||| | | | ||||| || ||||||||  |||||| |||||||||    
T  42628012 gttaaatattttgattttcaatacattgaatatacatattttcattaatacttaccacttataatttttaaa 42627941  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 34652534 - 34652463
Alignment:
Q  33 ttaaatattttgattttcaatatattgaacacatacatttttataaatacttataacttatgatttttaaag 104  Q
    ||||||| ||| ||||| ||||||||||| ||||| ||||||||||| |  ||| |||||| ||||||||||    
T  34652534 ttaaatagtttaatttttaatatattgaatacatatatttttataaaaatctattacttataatttttaaag 34652463  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 36621966 - 36622046
Alignment:
Q  27 aaaatgttaaatattttgattttcaatatattgaacacatacatttttataaatacttataacttatgatttttaaagagt 107  Q
    |||| ||||||||||||||||| ||| | | |||  |||| |||||||| |||||||||| |||||||  | |||||||||    
T  36621966 aaaaagttaaatattttgatttccaaaacaatgattacatgcatttttaaaaatacttattacttatgggtcttaaagagt 36622046  T

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Target: scaffold0178 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 15908 - 15961
Alignment:
Q  33 ttaaatattttgattttcaatatattgaacacatacatttttataaatacttat 86  Q
    |||||||||||||||||||||| ||  || ||| ||||||||||||||| ||||    
T  15908 ttaaatattttgattttcaatacatcaaatacacacatttttataaatatttat 15961  T

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