View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21143_high_7 (Length: 236)
Name: NF21143_high_7
Description: NF21143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21143_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 39769686 - 39769906
Alignment:
| Q |
1 |
acaaaccctaaagtttaggagttaatgcacataccaaattggaatagaaactggcagacaaaggagcacagtgtatacaatcacaaggaacccaaagaag |
100 |
Q |
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| T |
39769686 |
acaaaccctaaagtttaggagttaatgcacataccaaattggaatagaaactggcagacaaaggagcacagtgtatacaatcacaaggaacccaaagaag |
39769785 |
T |
|
| Q |
101 |
atcactcccagcatccaacgcaacaagaaacgaagtactcggtgttcctatatcaatccacgtgtaatgtaaccagccaaagtcatttccaaacgacatc |
200 |
Q |
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| T |
39769786 |
atcactcccagcatccaacgcaacaagaaacgaagtactcggtgttcctatatcaatccacgtgtaatgtaaccagccaaagtcatttccaaacgacatc |
39769885 |
T |
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| Q |
201 |
gttttgctaccttgagaagga |
221 |
Q |
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| T |
39769886 |
gttttgctaccttgagaagga |
39769906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 174
Target Start/End: Complemental strand, 25620237 - 25620120
Alignment:
| Q |
57 |
gacaaaggagcacagtgtatacaatcacaaggaacccaaagaagatcactcccagcatccaacgcaacaagaaacgaagtactcggtgttcctatatcaa |
156 |
Q |
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| T |
25620237 |
gacaatggagcacattctatgcaatcacaagggacccaaaacatatcactaccagtgtccaatgcaactagaaatgaaacatttggagttcctatatcaa |
25620138 |
T |
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| Q |
157 |
tccacgtgtaatgtaacc |
174 |
Q |
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|||| |||||||| |||| |
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| T |
25620137 |
tccatgtgtaatgcaacc |
25620120 |
T |
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