View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21143_low_1 (Length: 598)

Name: NF21143_low_1
Description: NF21143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21143_low_1
NF21143_low_1
[»] chr3 (12 HSPs)
chr3 (253-588)||(32996678-32997015)
chr3 (354-422)||(5354405-5354473)
chr3 (253-304)||(17227946-17227997)
chr3 (252-287)||(38742189-38742224)
chr3 (254-300)||(41755499-41755545)
chr3 (253-302)||(21812600-21812649)
chr3 (253-302)||(45242987-45243036)
chr3 (253-286)||(46721974-46722007)
chr3 (254-302)||(36750437-36750485)
chr3 (254-302)||(37105077-37105125)
chr3 (254-302)||(44686255-44686302)
chr3 (254-302)||(49757182-49757230)
[»] chr2 (7 HSPs)
chr2 (360-585)||(24741513-24741738)
chr2 (254-335)||(24741772-24741853)
chr2 (254-302)||(4479702-4479750)
chr2 (254-302)||(14573261-14573309)
chr2 (254-302)||(14573999-14574047)
chr2 (254-302)||(21471017-21471065)
chr2 (254-302)||(21471954-21472002)
[»] chr6 (15 HSPs)
chr6 (1-240)||(30820440-30820671)
chr6 (486-585)||(24549639-24549742)
chr6 (2-79)||(30815235-30815314)
chr6 (252-302)||(15083318-15083368)
chr6 (75-165)||(30815330-30815420)
chr6 (254-302)||(3543063-3543111)
chr6 (253-333)||(33078283-33078363)
chr6 (256-302)||(3542816-3542862)
chr6 (253-335)||(24551566-24551648)
chr6 (354-407)||(24551489-24551541)
chr6 (253-302)||(33480628-33480677)
chr6 (254-302)||(7159341-7159389)
chr6 (254-302)||(7193338-7193386)
chr6 (254-302)||(7532440-7532488)
chr6 (250-302)||(22579931-22579983)
[»] chr8 (8 HSPs)
chr8 (354-437)||(25876629-25876712)
chr8 (254-437)||(7424421-7424610)
chr8 (254-338)||(25876521-25876605)
chr8 (252-304)||(1365827-1365879)
chr8 (254-302)||(34992264-34992312)
chr8 (254-304)||(61454-61504)
chr8 (253-302)||(27918047-27918096)
chr8 (254-302)||(41859310-41859358)
[»] chr4 (14 HSPs)
chr4 (355-437)||(42544596-42544678)
chr4 (254-338)||(42544488-42544572)
chr4 (252-302)||(21165445-21165495)
chr4 (252-302)||(38694954-38695004)
chr4 (253-302)||(25371545-25371594)
chr4 (254-287)||(52757813-52757846)
chr4 (254-302)||(37275088-37275136)
chr4 (259-302)||(3847891-3847934)
chr4 (255-302)||(36864818-36864865)
chr4 (254-304)||(47198605-47198655)
chr4 (254-304)||(55160065-55160114)
chr4 (254-302)||(11417687-11417735)
chr4 (254-302)||(26611283-26611331)
chr4 (254-302)||(29651332-29651380)
[»] chr1 (8 HSPs)
chr1 (253-302)||(49610705-49610754)
chr1 (254-302)||(193850-193898)
chr1 (253-302)||(43737728-43737777)
chr1 (254-302)||(1012547-1012595)
chr1 (254-302)||(16270207-16270255)
chr1 (254-302)||(23440865-23440913)
chr1 (254-302)||(51974437-51974485)
chr1 (254-302)||(51987827-51987875)
[»] scaffold0041 (1 HSPs)
scaffold0041 (252-302)||(27575-27625)
[»] chr5 (6 HSPs)
chr5 (260-302)||(4607470-4607512)
chr5 (254-302)||(8204120-8204168)
chr5 (254-302)||(12190158-12190206)
chr5 (254-302)||(15184017-15184065)
chr5 (359-422)||(31147477-31147538)
chr5 (253-301)||(39950403-39950451)
[»] scaffold0311 (1 HSPs)
scaffold0311 (254-302)||(160-208)
[»] chr7 (8 HSPs)
chr7 (254-302)||(668179-668227)
chr7 (254-302)||(17145622-17145670)
chr7 (254-302)||(37468910-37468958)
chr7 (254-302)||(37469005-37469053)
chr7 (254-302)||(37864307-37864355)
chr7 (254-302)||(38778854-38778902)
chr7 (254-302)||(38779563-38779611)
chr7 (254-302)||(41194513-41194561)


Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 253 - 588
Target Start/End: Complemental strand, 32997015 - 32996678
Alignment:
Q  253 tggtgccatttaatttgggaaagaagacttttttctc-accatgagaaagtctctttaccaaggacacctgtcgattttgaacttgcnnnnnnnnnnnnn 351  Q
    ||||||||||||||||| |||||||||||||||| || |||||| ||||||||||||||||||||||| ||||| ||||||||||||                 
T  32997015 tggtgccatttaatttgagaaagaagacttttttttccaccatgggaaagtctctttaccaaggacacgtgtcggttttgaacttgcaaaaaaaaaaaaa 32996916  T
Q  352 nn-ctcaatttattattttaatgttgtttccaagcttactactgcacctccccatttttccattacaccacaaaactgattgattaaaacatgaaattat 450  Q
       |||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32996915 aaactcagtttattattttaatgttatttccaagcttactactgcacctccccatttctccattacaccacaaaactgattgattaaaacatgaaattat 32996816  T
Q  451 attattcttcttctcacgtgcatcaaatatgaaaaaactcacaacataagaatacccagaaaaagcttaacatcaattgttcttcttctagcgtaaaata 550  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  32996815 attcttcttcttctcacgtgcatcaaatatgaaaaaactcacaacataagaatacccagaaaaagcttaacatcaactgttcttcttctcgcgtaaaata 32996716  T
Q  551 ctcagtttccaacaaagaaaatcaactcttcttctctg 588  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  32996715 ctcagtttccaacaaagaacatcaactcttcttctctg 32996678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 422
Target Start/End: Complemental strand, 5354473 - 5354405
Alignment:
Q  354 ctcaatttattattttaatgttgtttccaagcttactactgcacctccccatttttccattacaccaca 422  Q
    |||||||||||||||||||||||| |  |||||||||  |||||||||| |||| | || |||||||||    
T  5354473 ctcaatttattattttaatgttgtgtttaagcttactgttgcacctccctatttcttcagtacaccaca 5354405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 304
Target Start/End: Complemental strand, 17227997 - 17227946
Alignment:
Q  253 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtct 304  Q
    ||||| ||||||||||||||||| |||||| |||| |||||||| |||||||    
T  17227997 tggtggcatttaatttgggaaaggagacttctttcccaccatgaaaaagtct 17227946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 287
Target Start/End: Complemental strand, 38742224 - 38742189
Alignment:
Q  252 ttggtgccatttaatttgggaaagaagacttttttc 287  Q
    ||||||||||||||| ||||||||||||||||||||    
T  38742224 ttggtgccatttaatctgggaaagaagacttttttc 38742189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 41755499 - 41755545
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaa 300  Q
    |||| ||||||||||||||||| ||| ||||||| ||||||||||||    
T  41755499 ggtgtcatttaatttgggaaaggagagttttttcccaccatgagaaa 41755545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 302
Target Start/End: Complemental strand, 21812649 - 21812600
Alignment:
Q  253 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    ||||||| ||||||||||||||| |||||||||| ||| ||||| |||||    
T  21812649 tggtgccgtttaatttgggaaaggagacttttttttcatcatgaaaaagt 21812600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 302
Target Start/End: Complemental strand, 45243036 - 45242987
Alignment:
Q  253 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    ||||||||||||||||||||||||||| || |||  ||||||| ||||||    
T  45243036 tggtgccatttaatttgggaaagaagagttcttttccaccatgggaaagt 45242987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 286
Target Start/End: Complemental strand, 46722007 - 46721974
Alignment:
Q  253 tggtgccatttaatttgggaaagaagactttttt 286  Q
    ||||| ||||||||||||||||||||||||||||    
T  46722007 tggtgtcatttaatttgggaaagaagactttttt 46721974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 36750485 - 36750437
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  36750485 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 36750437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 37105125 - 37105077
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||||| ||||||||||||||  ||||||||||| ||||||| ||||||    
T  37105125 ggtgccgtttaatttgggaaacgagacttttttcccaccatgggaaagt 37105077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 44686255 - 44686302
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    ||||||||||||||||| |||| ||| |||||| |||||||||||||||    
T  44686255 ggtgccatttaatttggaaaaggagagtttttt-tcaccatgagaaagt 44686302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 49757230 - 49757182
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||||| ||||||||||||||| |||||||||||  |||||| ||||||    
T  49757230 ggtgccgtttaatttgggaaaggagacttttttcctaccatgggaaagt 49757182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 178; Significance: 1e-95; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 360 - 585
Target Start/End: Complemental strand, 24741738 - 24741513
Alignment:
Q  360 ttattattttaatgttgtttccaagcttactactgcacctccccatttttccattacaccacaaaactgattgattaaaacatgaaattatattattctt 459  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||| |||||    
T  24741738 ttattattttaatgttgtttccaagcttactactgcacctccccatttcttcagtacaccacaaaactgattgattaaaacatgaaattatattcttctt 24741639  T
Q  460 cttctcacgtgcatcaaatatgaaaaaactcacaacataagaatacccagaaaaagcttaacatcaattgttcttcttctagcgtaaaatactcagtttc 559  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||| ||||| |||||||||||||    
T  24741638 cttctcacgtacatcaaatatgaaaaaactcacaacataagaatacccaaaaaaggcttaacatcaattgtacttcttctcgcgtacaatactcagtttc 24741539  T
Q  560 caacaaagaaaatcaactcttcttct 585  Q
    |||||||||| ||||||| |||||||    
T  24741538 caacaaagaacatcaactattcttct 24741513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 254 - 335
Target Start/End: Complemental strand, 24741853 - 24741772
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtctctttaccaaggacacctgtcgattttgaact 335  Q
    |||||| ||||||||||||||||||||||||||| |||||||  |||  ||||||||||||||||||||||  |||||||||    
T  24741853 ggtgccgtttaatttgggaaagaagacttttttcccaccatggaaaaacctctttaccaaggacacctgtcagttttgaact 24741772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 4479750 - 4479702
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||||||||||||||||||||| ||| || |||||||||||| ||||||    
T  4479750 ggtgccatttaatttgggaaaggagagttctttctcaccatgggaaagt 4479702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 14573261 - 14573309
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||||||||||||||||||||| ||| ||||||| ||||||| ||||||    
T  14573261 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagt 14573309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 14574047 - 14573999
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||||||||||||||||||||| ||| || |||| |||||| |||||||    
T  14574047 ggtgccatttaatttgggaaaggagagttctttcccaccataagaaagt 14573999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 21471017 - 21471065
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  21471017 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 21471065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 21472002 - 21471954
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  21472002 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 21471954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 126; Significance: 1e-64; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 30820440 - 30820671
Alignment:
Q  1 gtatgacaaacatacttatcaaggttattagtgatatgccatgtattttattgtgggtcatggttgtgccaataatcacttatagttgaactccctatag 100  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||       |||||      
T  30820440 gtatgacaaacatacttagaaaggttattagtgatatgccatgtattttattgtgggtcatggctgtgccaataatcacttgtagt-------cctatcc 30820532  T
Q  101 atgccaaaattaaatgtttaaaagtaagtattacattttagtcgaatcgattaaatttaaattttgcatctcacttgatagcatcatgaaaaatgtacaa 200  Q
    |||||||||||||| |||||||| |||   |||||||||||| |||| |||||||||| ||||||| |||||||||| |||||||||||||||| | |||    
T  30820533 atgccaaaattaaacgtttaaaaataaag-ttacattttagttgaatggattaaatttgaattttgtatctcacttgttagcatcatgaaaaatctccaa 30820631  T
Q  201 catggttggctccattggactatacattggtgggaaacca 240  Q
    ||||||| | ||||||||||||||||| ||||||||||||    
T  30820632 catggtttgttccattggactatacataggtgggaaacca 30820671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 486 - 585
Target Start/End: Complemental strand, 24549742 - 24549639
Alignment:
Q  486 aactcacaacataagaatacccagaaaaa----gcttaacatcaattgttcttcttctagcgtaaaatactcagtttccaacaaagaaaatcaactcttc 581  Q
    ||||||||||||||||| |||||||||||    |||||||||||| | |||||||||| |||||   ||||||||||| ||||||||| |||||||||||    
T  24549742 aactcacaacataagaaaacccagaaaaaaaaagcttaacatcaactattcttcttctcgcgtaccctactcagtttcgaacaaagaacatcaactcttc 24549643  T
Q  582 ttct 585  Q
    ||||    
T  24549642 ttct 24549639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 30815235 - 30815314
Alignment:
Q  2 tatgacaaacatacttatcaaggttattagtgatatgccatgta--ttttattgtgggtcatggttgtgccaataatcac 79  Q
    ||||||||| | ||||| ||||||||||||||||||| ||||||  |||| | ||||| | |||||||||||||||||||    
T  30815235 tatgacaaagagacttagcaaggttattagtgatatgtcatgtattttttgtcgtgggccgtggttgtgccaataatcac 30815314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 15083368 - 15083318
Alignment:
Q  252 ttggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||||||||||||||||||||||| ||| || |||| ||||||||||||||    
T  15083368 ttggtgccatttaatttgggaaaggagagttctttcccaccatgagaaagt 15083318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 165
Target Start/End: Original strand, 30815330 - 30815420
Alignment:
Q  75 atcacttatagttgaactccctatagatgccaaaattaaatgtttaaaagtaagtattacattttagtcgaatcgattaaatttaaatttt 165  Q
    ||||||||| || ||||| ||| | ||||| ||||||||| |||||||| | | | ||| |||||||| ||||| ||||||||||||||||    
T  30815330 atcacttattgtggaacttcctgttgatgcaaaaattaaaggtttaaaattgaatgttatattttagttgaatccattaaatttaaatttt 30815420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 3543111 - 3543063
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||||||||||||||||||||| ||| ||||||| ||||||| ||||||    
T  3543111 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagt 3543063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 333
Target Start/End: Complemental strand, 33078363 - 33078283
Alignment:
Q  253 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtctctttaccaaggacacctgtcgattttgaa 333  Q
    ||||||| |||||||||| |||  |||||||||| | |||||| || |||| ||||||| ||||||||||||  |||||||    
T  33078363 tggtgccgtttaatttggaaaatgagactttttttttaccatgggacagtccctttacccaggacacctgtcagttttgaa 33078283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 3542816 - 3542862
Alignment:
Q  256 tgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||||||||||||||||||| ||| ||||||| ||||||| ||||||    
T  3542816 tgccatttaatttgggaaaggagagttttttcccaccatgggaaagt 3542862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 253 - 335
Target Start/End: Complemental strand, 24551648 - 24551566
Alignment:
Q  253 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtctctttaccaaggacacctgtcgattttgaact 335  Q
    ||||||| ||||||||| |||   ||||||||||  ||| |||| |||||  ||||||| |||||| ||||||||||||||||    
T  24551648 tggtgccgtttaatttgagaattgagactttttttccactatgaaaaagtacctttacccaggacatctgtcgattttgaact 24551566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 407
Target Start/End: Complemental strand, 24551541 - 24551489
Alignment:
Q  354 ctcaatttattattttaatgttgtttccaagcttactactgcacctccccattt 407  Q
    |||||||||||||||||||||| ||| ||||||||||| |||| |||| |||||    
T  24551541 ctcaatttattattttaatgtt-ttttcaagcttactattgcatctcctcattt 24551489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 302
Target Start/End: Complemental strand, 33480677 - 33480628
Alignment:
Q  253 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    ||||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  33480677 tggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 33480628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 7159389 - 7159341
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||||||||||||||||||||| | ||||||||| || |||| ||||||    
T  7159389 ggtgccatttaatttgggaaagcaaacttttttcccatcatgggaaagt 7159341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 7193338 - 7193386
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  7193338 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 7193386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 7532488 - 7532440
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||| ||||||||||||||||| |||||| ||| |||||||| ||||||    
T  7532488 ggtggcatttaatttgggaaaggagacttctttttcaccatgggaaagt 7532440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 302
Target Start/End: Original strand, 22579931 - 22579983
Alignment:
Q  250 tcttggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||||||||||||||||||||||||| ||| || |||  ||||||| ||||||    
T  22579931 tcttggtgccatttaatttgggaaaggagagttcttttccaccatgggaaagt 22579983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 8e-35; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 354 - 437
Target Start/End: Original strand, 25876629 - 25876712
Alignment:
Q  354 ctcaatttattattttaatgttgtttccaagcttactactgcacctccccatttttccattacaccacaaaactgattgattaa 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  25876629 ctcaatttattattttaatgttgtttccaagcttactactgcacctccccatttccccattacaccacaaaactgattgattaa 25876712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 254 - 437
Target Start/End: Complemental strand, 7424610 - 7424421
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtctctttaccaaggacacctgtcgattttgaacttgcnnnnnnnnnnnnnnn 353  Q
    ||||| |||||||||| ||||||||||||||||  ||||||| ||||||||||||||||||||||| ||||| |||| |||||||                   
T  7424610 ggtgcaatttaatttgagaaagaagactttttttccaccatgggaaagtctctttaccaaggacacttgtcggtttttaacttgcaaaaaaaaaaaacaa 7424511  T
Q  354 ------ctcaatttattattttaatgttgtttccaagcttactactgcacctccccatttttccattacaccacaaaactgattgattaa 437  Q
          |||||||||||||||||||||| ||||||| |||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  7424510 aaaaaactcaatttattattttaatgttctttccaaacttactactgcacctccccatttccgcattacaccacaaaactgattgattaa 7424421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 254 - 338
Target Start/End: Original strand, 25876521 - 25876605
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtctctttaccaaggacacctgtcgattttgaacttgc 338  Q
    |||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||| ||||| || ||||| |||| |||||||    
T  25876521 ggtgccatttaatttgggaaagaagatttttttcccaccatgggaaagtctctttacgaaggatacttgtcggtttttaacttgc 25876605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 1365827 - 1365879
Alignment:
Q  252 ttggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtct 304  Q
    |||||| ||||||||||||||||| |||||| |||| ||||||| ||||||||    
T  1365827 ttggtggcatttaatttgggaaaggagacttctttcccaccatgggaaagtct 1365879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 34992312 - 34992264
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||||||||||||||||||||| ||| ||||||| ||||||| ||||||    
T  34992312 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagt 34992264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 304
Target Start/End: Original strand, 61454 - 61504
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtct 304  Q
    |||| ||||||||||||||||| |||||| |||| ||||||| ||||||||    
T  61454 ggtggcatttaatttgggaaaggagacttctttcccaccatgggaaagtct 61504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 302
Target Start/End: Complemental strand, 27918096 - 27918047
Alignment:
Q  253 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    ||||||| ||||||||||||||  ||||||||||| ||||||| ||||||    
T  27918096 tggtgccgtttaatttgggaaatgagacttttttcccaccatgggaaagt 27918047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 41859310 - 41859358
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  41859310 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 41859358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 7e-32; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 355 - 437
Target Start/End: Original strand, 42544596 - 42544678
Alignment:
Q  355 tcaatttattattttaatgttgtttccaagcttactactgcacctccccatttttccattacaccacaaaactgattgattaa 437  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||    
T  42544596 tcaatttattattttaatgttgtttccaagcttactactgcacctccccatttccccattacaccataaaactgattgattaa 42544678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 254 - 338
Target Start/End: Original strand, 42544488 - 42544572
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtctctttaccaaggacacctgtcgattttgaacttgc 338  Q
    |||||||||||||||||||||||||||||||||| |||||||  |||||||||||| ||||||||| ||||| |||| |||||||    
T  42544488 ggtgccatttaatttgggaaagaagacttttttcccaccatggaaaagtctctttatcaaggacacttgtcggtttttaacttgc 42544572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 21165445 - 21165495
Alignment:
Q  252 ttggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||||||||||||||||||||||||| | || |||| ||||||||||||||    
T  21165445 ttggtgccatttaatttgggaaagaatagttctttcccaccatgagaaagt 21165495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 38695004 - 38694954
Alignment:
Q  252 ttggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||||||||||||||||||||||| ||| || |||| ||||||||||||||    
T  38695004 ttggtgccatttaatttgggaaaggagagttctttcccaccatgagaaagt 38694954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 253 - 302
Target Start/End: Complemental strand, 25371594 - 25371545
Alignment:
Q  253 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    ||||| ||||||||||||||||| |||||| |||| ||||||||||||||    
T  25371594 tggtgacatttaatttgggaaaggagacttctttcccaccatgagaaagt 25371545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 254 - 287
Target Start/End: Original strand, 52757813 - 52757846
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttc 287  Q
    ||||||||||||||||||||||||||||||||||    
T  52757813 ggtgccatttaatttgggaaagaagacttttttc 52757846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 37275088 - 37275136
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||||| ||||||||||||||| |||||| |||| ||||||||||||||    
T  37275088 ggtgccgtttaatttgggaaaggagacttctttcccaccatgagaaagt 37275136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 302
Target Start/End: Original strand, 3847891 - 3847934
Alignment:
Q  259 catttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    ||||||||||||||||| ||||||||||| ||||||| ||||||    
T  3847891 catttaatttgggaaaggagacttttttcccaccatgggaaagt 3847934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 302
Target Start/End: Original strand, 36864818 - 36864865
Alignment:
Q  255 gtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||| |||||||||||||||| ||| || |||||||||||||||||||    
T  36864818 gtgctatttaatttgggaaaggagagttctttctcaccatgagaaagt 36864865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 304
Target Start/End: Original strand, 47198605 - 47198655
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtct 304  Q
    |||| ||||||||||||||||| |||||| |||| ||||||| ||||||||    
T  47198605 ggtgacatttaatttgggaaaggagacttctttcccaccatgggaaagtct 47198655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 55160114 - 55160065
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtct 304  Q
    |||| ||||||||||||||||| |||| |||||||||||||| ||||||||    
T  55160114 ggtggcatttaatttgggaaaggagac-tttttctcaccatgggaaagtct 55160065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 11417687 - 11417735
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  11417687 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 11417735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 26611331 - 26611283
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||| ||||||||||||||||| ||| ||||||| ||||||| ||||||    
T  26611331 ggtgtcatttaatttgggaaaggagagttttttcccaccatgggaaagt 26611283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 29651380 - 29651332
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  29651380 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 29651332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 253 - 302
Target Start/End: Original strand, 49610705 - 49610754
Alignment:
Q  253 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    ||||||||||| ||||||||||||||||||||||| | ||||| ||||||    
T  49610705 tggtgccattttatttgggaaagaagacttttttccctccatgggaaagt 49610754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 193850 - 193898
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||||||||||||||||||||| ||| || |||| ||||||||||||||    
T  193850 ggtgccatttaatttgggaaaggagagttctttcccaccatgagaaagt 193898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 302
Target Start/End: Original strand, 43737728 - 43737777
Alignment:
Q  253 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    ||||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  43737728 tggtgccatttaatttgggaaagtagagttatttcccaccatgggaaagt 43737777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 1012547 - 1012595
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||||| ||||||||||||||| ||| ||||||| ||||||| ||||||    
T  1012547 ggtgccgtttaatttgggaaaggagatttttttcccaccatgggaaagt 1012595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 16270207 - 16270255
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  16270207 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 16270255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 23440913 - 23440865
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  23440913 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 23440865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 51974437 - 51974485
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  51974437 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 51974485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 51987827 - 51987875
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||| ||||||||||||||||| |||||| |||| ||||||| ||||||    
T  51987827 ggtggcatttaatttgggaaaggagacttctttcccaccatgggaaagt 51987875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 27625 - 27575
Alignment:
Q  252 ttggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    ||||||||||||||||||| |||| ||| ||||||| ||||||| ||||||    
T  27625 ttggtgccatttaatttggaaaaggagagttttttcccaccatgggaaagt 27575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 260 - 302
Target Start/End: Original strand, 4607470 - 4607512
Alignment:
Q  260 atttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||||||||||||||| ||||||||||| ||||||| ||||||    
T  4607470 atttaatttgggaaagtagacttttttcccaccatgggaaagt 4607512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 8204120 - 8204168
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  8204120 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 8204168  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 12190206 - 12190158
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||||||||||||||||||||  ||| ||||||| ||||||| ||||||    
T  12190206 ggtgccatttaatttgggaaaagagagttttttcccaccatgggaaagt 12190158  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 15184065 - 15184017
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  15184065 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 15184017  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 359 - 422
Target Start/End: Original strand, 31147477 - 31147538
Alignment:
Q  359 tttattattttaatgttgtttccaagcttactactgcacctccccatttttccattacaccaca 422  Q
    |||||||||||||||||||||  ||||||||| ||||||  |||||||| | ||||||| ||||    
T  31147477 tttattattttaatgttgttttgaagcttactgctgcac--ccccatttcttcattacaacaca 31147538  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 301
Target Start/End: Original strand, 39950403 - 39950451
Alignment:
Q  253 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaag 301  Q
    ||||||||||||||||||||||| ||| || |||| ||||||| |||||    
T  39950403 tggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 39950451  T

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Target: scaffold0311 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 208 - 160
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  208 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 160  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 668179 - 668227
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  668179 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 668227  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 17145622 - 17145670
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  17145622 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 17145670  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 37468910 - 37468958
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  37468910 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 37468958  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 37469053 - 37469005
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  37469053 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 37469005  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 37864355 - 37864307
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    ||||||||||||||||||||| |||| || |||| ||||||| ||||||    
T  37864355 ggtgccatttaatttgggaaataagagttctttcccaccatgggaaagt 37864307  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 38778854 - 38778902
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  38778854 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 38778902  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 38779611 - 38779563
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  38779611 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 38779563  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 41194513 - 41194561
Alignment:
Q  254 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 302  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  41194513 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 41194561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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