View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21143_low_2 (Length: 491)
Name: NF21143_low_2
Description: NF21143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21143_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 10 - 477
Target Start/End: Complemental strand, 39769619 - 39769152
Alignment:
| Q |
10 |
gcataggtttgaatgaagttttagattctaaggtaagagttggtaactggtttagcacttatttccagtaattgattggcaggtgctccttcacatatgg |
109 |
Q |
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| T |
39769619 |
gcataggtttgaatgaagttttagattctaaggtaagagttggtaactggtttagcacttatttccagtaattgattggcaggtgctccttcacatatgg |
39769520 |
T |
|
| Q |
110 |
ggcatttattatgcaggataaagatctgaatgagtatagtccctctcgttcgttatccagcaagcatctatcatgcagccaccggttgtgtgatatgggt |
209 |
Q |
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| T |
39769519 |
ggcatttattatgcaggatagagatctgaatgagtatagtccctctcgttcgttatccagcaagcatctatcatgcagccaccggttgtgtgatatgggt |
39769420 |
T |
|
| Q |
210 |
tcaaattgtaaaacctccaagcaacagcagtgtccgtacacgattaattacttatcagataatacatcaagttctggattgttagttgaggatatatttc |
309 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39769419 |
tcaaattgtaaaacctcgaagcaacagcagtgtccgtacacgattaattacttatcagataatacatcaagttctggattgttagttgaggatatatttc |
39769320 |
T |
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| Q |
310 |
atcttcaatccggcgatggcagcacatctaactcttctgttcaggctccagttgttgtcgggtatgtggacgtccctttgcctgatgatgatgttactct |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39769319 |
atcttcaatccggcgatggcagcacatctaactcttctgttcaggctccagttgttgtcgggtatgtggacgtccctttgcctgatgatgatgttactct |
39769220 |
T |
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| Q |
410 |
tgaaaatgtatctcccggtcctttaactgacatcaattttgttgaatgcaggtgtggtatgaagcaaa |
477 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39769219 |
tgaaaatgtatctcccagtcctttaactgacatcaattttgttgaatgcaggtgtggtatgaagcaaa |
39769152 |
T |
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