View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21143_low_4 (Length: 459)

Name: NF21143_low_4
Description: NF21143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21143_low_4
NF21143_low_4
[»] chr5 (8 HSPs)
chr5 (8-459)||(40181227-40181680)
chr5 (208-456)||(38605714-38605960)
chr5 (336-424)||(40180547-40180635)
chr5 (280-415)||(41885856-41885992)
chr5 (356-457)||(38605019-38605120)
chr5 (12-73)||(40180938-40180999)
chr5 (31-100)||(38606068-38606137)
chr5 (43-100)||(41885617-41885674)
[»] chr1 (1 HSPs)
chr1 (12-431)||(46358821-46359239)
[»] chr8 (10 HSPs)
chr8 (8-192)||(44459246-44459430)
chr8 (8-192)||(44466779-44466963)
chr8 (347-431)||(44459583-44459667)
chr8 (347-431)||(44467116-44467200)
chr8 (31-100)||(34502619-34502688)
chr8 (213-431)||(44460150-44460369)
chr8 (213-431)||(44467683-44467902)
chr8 (356-431)||(34502307-34502382)
chr8 (31-113)||(44459962-44460044)
chr8 (31-113)||(44467495-44467577)
[»] chr6 (1 HSPs)
chr6 (347-402)||(410919-410974)


Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 8 - 459
Target Start/End: Complemental strand, 40181680 - 40181227
Alignment:
Q  8 acatcatcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttc 107  Q
    ||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40181680 acatcatcaacaacactttctaatcagtgttattgaaacctcttgtcaaactaaattagctgaaaccctagaagttccacctcagaatcttatatacttc 40181581  T
Q  108 ataaagatgctttggaaggataataaggatctcatcgatacccatgttttggaatatcttgttgaatcaataagcactgctgttcactatgattttaatg 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  40181580 ataaagatgctttggaaggataataaggatctcatcgatacccatgttttggaatatcttgttgaatcaataagcactactgttcactatgatttcaatg 40181481  T
Q  208 ttaaactaaggaagaaatacatatt-ttttctgtgggacatgcttaagaaaattggccgctatgaaactgactttcttaacgcaaggattctaaataaac 306  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  40181480 ttaaactaaggaagaaatacatatttttttctgtgggacatgcttaagtatattggccgctatgaaactgactttcttaatgcaaggattctcaataaac 40181381  T
Q  307 tcatagaatccttctctgttat-gggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatactta 405  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  40181380 tcatagaatccttctcagttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacata 40181281  T
Q  406 ttactatacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgat 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40181280 ttactatacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgat 40181227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 208 - 456
Target Start/End: Complemental strand, 38605960 - 38605714
Alignment:
Q  208 ttaaactaaggaagaaatacatattttttctgtgggacatgcttaagaaaattggccgctatgaaactgactttcttaacgcaaggattctaaataaact 307  Q
    ||||||||||||||||  ||||| |||||||||||||  |||||||||| |||||||  ||| |||| | | |||||||| ||   ||||| ||| | ||    
T  38605960 ttaaactaaggaagaatgacatactttttctgtgggatttgcttaagaatattggccattatcaaaccggccttcttaacccacccattctcaatcacct 38605861  T
Q  308 catagaatccttctctgttatgggcagc-aaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttat 406  Q
    |||| ||| ||||||  |||| ||  |  |||| ||| | |||||||| ||||||||||  ||||| || ||||||||||||||||||||||| || |||    
T  38605860 catacaattcttctcaattataggtcgagaaggcaagtctgcacttgaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacatat 38605761  T
Q  407 tactatacactgcaagctcttttgaggagcacaaggtgtagtgctgatat 456  Q
    |||| |||||| |||||||||||   || ||||| |||||||||||||||    
T  38605760 tactttacacttcaagctctttt---gaccacaacgtgtagtgctgatat 38605714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 336 - 424
Target Start/End: Complemental strand, 40180635 - 40180547
Alignment:
Q  336 aaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagct 424  Q
    |||| ||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||||| |||  || |||||||||||||    
T  40180635 aagggaaggctgcacttgatgtttttcataaatttgaggtctttcaatgtgtgccaaatcaagatacatatatctttacactgcaagct 40180547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 415
Target Start/End: Original strand, 41885856 - 41885992
Alignment:
Q  280 ttcttaacgcaaggattctaaataaactcatagaatccttctctgttatgggcagc-aaggaaaggcagcacttgatgtttttcataattttgacgtatt 378  Q
    ||||||||||  |||||||||||||||| ||||||| ||||||  |||||||  |  |||| || || ||||  |||||||||||||| ||||| |  ||    
T  41885856 ttcttaacgctcggattctaaataaactaatagaattcttctcaattatggggcgagaagggaaagctgcacacgatgtttttcataaatttgaggcttt 41885955  T
Q  379 tcaatgtgtgccaaatcaagatacttattactataca 415  Q
    |||||||| ||||||||||||||| ||||||| ||||    
T  41885956 tcaatgtgagccaaatcaagatacatattactttaca 41885992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 356 - 457
Target Start/End: Complemental strand, 38605120 - 38605019
Alignment:
Q  356 gtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgata 455  Q
    ||||||||||| ||||| || ||||| |||||||| ||||||||| | |||  || ||||||| |||||||||| | ||  ||||| || ||||||||||    
T  38605120 gtttttcataaatttgaggtctttcagtgtgtgcctaatcaagattcatatatctttacactggaagctctttttaagacaacaagttgcagtgctgata 38605021  T
Q  456 tg 457  Q
    ||    
T  38605020 tg 38605019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 40180999 - 40180938
Alignment:
Q  12 catcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaac 73  Q
    ||||||||| | ||| || ||||||||||| |||||||||||||||||||||| | ||||||    
T  40180999 catcaacaacattttttactcaaagttattaaaacctcttgtcaaactaaatttgttgaaac 40180938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 38606137 - 38606068
Alignment:
Q  31 tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttat 100  Q
    ||||||||||| |||||||||||||||| ||||||| | |||||| ||| ||  ||||||| || |||||    
T  38606137 tcaaagttattcaaacctcttgtcaaaccaaattagttcaaaccccaaaggtatcacctcacaaccttat 38606068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 41885617 - 41885674
Alignment:
Q  43 aaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttat 100  Q
    ||||||||||||||| |||||||| | |||||| ||| ||||||||||| ||| ||||    
T  41885617 aaacctcttgtcaaattaaattagttcaaaccccaaatgttccacctcataattttat 41885674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 12 - 431
Target Start/End: Original strand, 46358821 - 46359239
Alignment:
Q  12 catcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttcataa 111  Q
    ||||||||| |||||  | | |||||||||||||||||||||||||||||||| | |||| ||| ||| |||| |||||| ||||||||  |||| ||||    
T  46358821 catcaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataa 46358920  T
Q  112 agatgctttggaaggataataaggatctcatcgatacccatgttttggaatatcttgttgaatcaataagcactgctgttcactatgattttaatgttaa 211  Q
    || || |||||||| |||| ||||| ||||||  ||||| |||| ||||||  ||||||  |  |||| ||   |||| |  |  ||||  |||| || |    
T  46358921 agttggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgtttcagaaatatgcc--gctggttccactgatgataatattca 46359018  T
Q  212 actaaggaagaaatacatattttttctgtgggacatgcttaagaaaattggccgctatgaaactgactttcttaacgcaaggattctaaataaactcata 311  Q
     |||||||||||  |||||||||||||||||||  |||||||| | ||||||| |||| | |||||| |||||| | | |||||||| ||| ||||| ||    
T  46359019 tctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagactgaccttcttagcaccaggattctcaatcaactccta 46359118  T
Q  312 gaatccttctctgttatgggcagc-aaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattact 410  Q
     | |||||     | |||    || |||||||| | | ||| || ||||||||||| ||||| | ||||||||| ||||| ||||||||||| |||  |     
T  46359119 cactcctttggattgatgttgtgccaaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatcc 46359218  T
Q  411 atacactgcaagctcttttga 431  Q
    |||| ||||||||| ||||||    
T  46359219 atacgctgcaagcttttttga 46359239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 8 - 192
Target Start/End: Original strand, 44459246 - 44459430
Alignment:
Q  8 acatcatcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttc 107  Q
    |||||| |||||| |||||  | | |||||||||||||||||||||||||||||||| | |||| ||| ||| |||| |||||| ||||||||  ||||     
T  44459246 acatcaacaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaacttt 44459345  T
Q  108 ataaagatgctttggaaggataataaggatctcatcgatacccatgttttggaatatcttgttgaatcaataagcactgctgttc 192  Q
    |||||| || |||||||| |||| ||||| ||||||  ||||| |||| ||||||  ||||||  ||||||| || || ||||||    
T  44459346 ataaagttggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgtttcatcaatatgctctactgttc 44459430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 8 - 192
Target Start/End: Original strand, 44466779 - 44466963
Alignment:
Q  8 acatcatcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttc 107  Q
    |||||| |||||| |||||  | | |||||||||||||||||||||||||||||||| | |||| ||| ||| |||| |||||| ||||||||  ||||     
T  44466779 acatcaacaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaacttt 44466878  T
Q  108 ataaagatgctttggaaggataataaggatctcatcgatacccatgttttggaatatcttgttgaatcaataagcactgctgttc 192  Q
    |||||| || |||||||| |||| ||||| ||||||  ||||| |||| ||||||  ||||||  ||||||| || || ||||||    
T  44466879 ataaagttggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgtttcatcaatatgctctactgttc 44466963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 347 - 431
Target Start/End: Original strand, 44459583 - 44459667
Alignment:
Q  347 gcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttga 431  Q
    |||||||| ||||||||||  ||||| |  ||||| |||||||||||||| ||||| ||||||| ||| ||||||||||||||||    
T  44459583 gcacttgaagtttttcatatgtttgaggcctttcagtgtgtgccaaatcacgatacatattactttactctgcaagctcttttga 44459667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 347 - 431
Target Start/End: Original strand, 44467116 - 44467200
Alignment:
Q  347 gcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttga 431  Q
    |||||||| ||||||||||  ||||| |  ||||| |||||||||||||| ||||| ||||||| ||| ||||||||||||||||    
T  44467116 gcacttgaagtttttcatatgtttgaggcctttcagtgtgtgccaaatcacgatacatattactttactctgcaagctcttttga 44467200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 34502688 - 34502619
Alignment:
Q  31 tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttat 100  Q
    |||||||||||||| |||||| ||||||||||||| ||||||||| ||| ||| | ||||| ||||||||    
T  34502688 tcaaagttattgaagcctcttctcaaactaaattaactgaaaccccaaaggtttcgcctcataatcttat 34502619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 431
Target Start/End: Original strand, 44460150 - 44460369
Alignment:
Q  213 ctaaggaagaaatacatattttttctgtgggacatgcttaagaaaattggccgctatgaaactgactttcttaacgcaaggattctaaataaactcatag 312  Q
    |||||||||||  |||||||||||||||||||  |||||||| | ||||||| |||| | |||||| |||||| | | |||||||| ||| ||||| ||     
T  44460150 ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagactgaccttcttagcaccaggattctcaatcaactcctac 44460249  T
Q  313 aatccttctctgttatgggcagc-aaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattacta 411  Q
    | |||||     | |||    || |||||||| | | ||| || ||||||||||| ||||| | ||||||||| ||||| ||||||||||| |||  | |    
T  44460250 actcctttggattgatgttgtgccaaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatcca 44460349  T
Q  412 tacactgcaagctcttttga 431  Q
    ||| ||||||||| ||||||    
T  44460350 tacgctgcaagcttttttga 44460369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 431
Target Start/End: Original strand, 44467683 - 44467902
Alignment:
Q  213 ctaaggaagaaatacatattttttctgtgggacatgcttaagaaaattggccgctatgaaactgactttcttaacgcaaggattctaaataaactcatag 312  Q
    |||||||||||  |||||||||||||||||||  |||||||| | ||||||| |||| | |||||| |||||| | | |||||||| ||| ||||| ||     
T  44467683 ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagactgaccttcttagcaccaggattctcaatcaactcctac 44467782  T
Q  313 aatccttctctgttatgggcagc-aaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattacta 411  Q
    | |||||     | |||    || |||||||| | | ||| || ||||||||||| ||||| | ||||||||| ||||| ||||||||||| |||  | |    
T  44467783 actcctttggattgatgttgtgccaaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatcca 44467882  T
Q  412 tacactgcaagctcttttga 431  Q
    ||| ||||||||| ||||||    
T  44467883 tacgctgcaagcttttttga 44467902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 431
Target Start/End: Complemental strand, 34502382 - 34502307
Alignment:
Q  356 gtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttga 431  Q
    ||||||||||| ||||| | ||||||||||||||| |||| |||||| ||   || ||||||| ||||||||||||    
T  34502382 gtttttcataaatttgaggcatttcaatgtgtgccgaatcgagatacatacacctttacactgaaagctcttttga 34502307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 113
Target Start/End: Original strand, 44459962 - 44460044
Alignment:
Q  31 tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttcataaag 113  Q
    ||||||||||||||||||| |  ||||||||||||  |||||||| ||| ||| | ||||| ||||||||  |||| ||||||    
T  44459962 tcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaag 44460044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 113
Target Start/End: Original strand, 44467495 - 44467577
Alignment:
Q  31 tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttcataaag 113  Q
    ||||||||||||||||||| |  ||||||||||||  |||||||| ||| ||| | ||||| ||||||||  |||| ||||||    
T  44467495 tcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaag 44467577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 402
Target Start/End: Original strand, 410919 - 410974
Alignment:
Q  347 gcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatac 402  Q
    |||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||    
T  410919 gcacttgaagtttttcataaatttgaggtatttcaatgtgttccaaatcaagatac 410974  T

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