View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21143_low_7 (Length: 259)
Name: NF21143_low_7
Description: NF21143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21143_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 244
Target Start/End: Original strand, 32244392 - 32244628
Alignment:
| Q |
8 |
catcacagagtgtatatttgttggtatctttacatatggaatcatgactgcagttaaatgaatgagaacaaatgtatatggcatgggatggtcccatgca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32244392 |
catcacagagtgtatatttgttggtatctttacatatggaatcatgactgcagttaaatgaatgagaacaaatgtatatggcatgggatggtcccatgca |
32244491 |
T |
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| Q |
108 |
ttctgcgtcgattctttacatgttgatatcattacttctttttcactctactttattcatttacagttttcattaagccataacagtgttgctcagactc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32244492 |
ttctgcgtcgattctttacatgttgatatcattacttctttttcactttacttaattcatttacagttttcattaagcagtaacagtgttgctcagactc |
32244591 |
T |
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| Q |
208 |
aaatatatagatgtatggagtaattaaagtagaaatt |
244 |
Q |
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||||||||||||||||| ||| ||||||||||||||| |
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| T |
32244592 |
aaatatatagatgtatgtagtgattaaagtagaaatt |
32244628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 244
Target Start/End: Original strand, 32250101 - 32250337
Alignment:
| Q |
8 |
catcacagagtgtatatttgttggtatctttacatatggaatcatgactgcagttaaatgaatgagaacaaatgtatatggcatgggatggtcccatgca |
107 |
Q |
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|||||||||| |||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32250101 |
catcacagagggtatatttgttgctatcttcacatatggaatcctgactgcagttaaatgaatgagaacaaatatatatggcatgggatggtcccatgca |
32250200 |
T |
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| Q |
108 |
ttctgcgtcgattctttacatgttgatatcattacttctttttcactctactttattcatttacagttttcattaagccataacagtgttgctcagactc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32250201 |
ttctgcgtcgattctttacatgttgatatcattacttctttttcactctactttattcatttacagttttcattaagccgtaacagtgttgctcagactc |
32250300 |
T |
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| Q |
208 |
aaatatatagatgtatggagtaattaaagtagaaatt |
244 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
32250301 |
aaatatatagatgtatggagtaattaaagtagaaatt |
32250337 |
T |
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