View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21143_low_8 (Length: 241)
Name: NF21143_low_8
Description: NF21143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21143_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 28 - 211
Target Start/End: Complemental strand, 18253467 - 18253284
Alignment:
| Q |
28 |
caaaccaaatattaggaaaatacagcacgtacgtttattcatctcatgtcacaaatttcttaacacactccttcaaaacacttgacacaatcagaaacag |
127 |
Q |
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| T |
18253467 |
caaaccaaatattaggaaaatacaacatgtacgtttattcatctcatgtcacaaatttcttaacacactccttcaaaacacttgacacaaccagaaacag |
18253368 |
T |
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| Q |
128 |
acacaacgaaatgaaatataaataattgaaagaaaacccagtaatcctgaagattcctcaatctttcatatgaataacatcata |
211 |
Q |
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| T |
18253367 |
acacaacgaaatgaaagataaataattaaaagaaaacccagtaatcctgaagattcctcattctttcatatgaataacatcata |
18253284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 18256230 - 18256284
Alignment:
| Q |
156 |
aaagaaaacccagtaatcctgaagattcctcaatctttcatatgaataacatcata |
211 |
Q |
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| T |
18256230 |
aaagaaaagccagtaa-catgaagattcctcactctttcatatgaataacatcata |
18256284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 18246347 - 18246303
Alignment:
| Q |
43 |
gaaaatacagcacgtacgtttattcatctcatgtcacaaatttct |
87 |
Q |
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| T |
18246347 |
gaaaatacaacacatacatttattcatctcatgtcacaaatttct |
18246303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 18256132 - 18256191
Alignment:
| Q |
29 |
aaaccaaatatt-aggaaaatacagcacgtacgtttattcatctcatgtcacaaatttct |
87 |
Q |
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|||||||||||| | ||||||| | ||| ||| ||||||||||||||||||||||||||| |
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| T |
18256132 |
aaaccaaatattcaagaaaataaaacacatacatttattcatctcatgtcacaaatttct |
18256191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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