View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21144_high_1 (Length: 490)
Name: NF21144_high_1
Description: NF21144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21144_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 18 - 481
Target Start/End: Complemental strand, 44849044 - 44848582
Alignment:
| Q |
18 |
acttgatgccgtgacttaatttggtgcatgaattagttgaagggttgcagtgacctgctaagttcaacgtaggggttcgaccattgccgaatctggagag |
117 |
Q |
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| T |
44849044 |
acttgatgctgtgacttaatttggtgcatgaattagttgaagggttgcagtgacctgctaagttcaacgtaggggttcgacctttgccgaatctggagag |
44848945 |
T |
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| Q |
118 |
gaaggcaatgtttatgtgggtgtatctcccagtggcacatgtttcatacagtgagccttcttcaccattttggccccagtagatggctatgccaccagca |
217 |
Q |
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| T |
44848944 |
gaaggcaatgtttatgtgggtgtatctcccagtggcacatgtttcatacagtgagccttcttcaccattttggccccagtagatggctatgccaccagca |
44848845 |
T |
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| Q |
218 |
taggaggttctaacaagagtgaggaaaagaaaaagtgacaaggtatgagaattctttgccatctttgtgaatgtctggggttgttgtgacttgtgaatga |
317 |
Q |
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| T |
44848844 |
taggaggttctaacaagagtgaggaaaagaaaaagtgacaaggtatgagaattctttgccatctttgtgaatgtctggggttgttgtgacttgtgaatga |
44848745 |
T |
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| Q |
318 |
ttactctttgcacttgtgatatttatactgtgaatgggttgtattcacaccttgacgtaatctaataatattttacactagcttccaattatatctaaat |
417 |
Q |
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| T |
44848744 |
ttactctttgcacttgtgatatttatactgtgaatgggttgtattcacaccttgacgtaatctaataatattttacactagcttccaattatatctaaat |
44848645 |
T |
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| Q |
418 |
aaaatatacatgtacatatgttttgccaagtaataatataatagtgatactataatgacctatg |
481 |
Q |
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| T |
44848644 |
-aaatatacatgttcatatgttttgccaagtaataatataatagtgatactataatgacctatg |
44848582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 288
Target Start/End: Complemental strand, 44837790 - 44837678
Alignment:
| Q |
182 |
ccattttggccccagtagatggctatgccaccagcataggaggttctaacaagagtgaggaa---aagaaaaagtgac---aaggtatgagaattctttg |
275 |
Q |
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| T |
44837790 |
ccattttggccccaatagattgctatgccaccagcatgggaagttgcaactagagtgaggaatagaagaataagagacaaaaaggtgtgagagttttttg |
44837691 |
T |
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| Q |
276 |
ccatctttgtgaa |
288 |
Q |
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| T |
44837690 |
ccatctttgtgaa |
44837678 |
T |
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