View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21144_high_3 (Length: 377)

Name: NF21144_high_3
Description: NF21144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21144_high_3
NF21144_high_3
[»] chr3 (25 HSPs)
chr3 (1-127)||(30489533-30489659)
chr3 (9-127)||(30520352-30520470)
chr3 (274-361)||(30489299-30489386)
chr3 (167-243)||(30489417-30489493)
chr3 (274-361)||(30520130-30520217)
chr3 (274-361)||(30485654-30485741)
chr3 (274-361)||(30505145-30505232)
chr3 (274-361)||(30515911-30515998)
chr3 (167-243)||(30520242-30520312)
chr3 (4-124)||(30505370-30505497)
chr3 (9-83)||(30516177-30516247)
chr3 (167-239)||(30516027-30516093)
chr3 (24-124)||(30522226-30522328)
chr3 (8-82)||(30525282-30525356)
chr3 (38-124)||(30487388-30487476)
chr3 (26-124)||(30503504-30503604)
chr3 (274-342)||(30506621-30506690)
chr3 (167-209)||(30505285-30505327)
chr3 (8-77)||(30487747-30487815)
chr3 (8-68)||(30491711-30491771)
chr3 (43-111)||(30449815-30449885)
chr3 (274-317)||(30482892-30482935)
chr3 (26-77)||(30483464-30483515)
chr3 (169-202)||(8411988-8412021)
chr3 (274-345)||(30522017-30522089)
[»] chr1 (1 HSPs)
chr1 (280-361)||(16933356-16933437)
[»] chr5 (2 HSPs)
chr5 (32-116)||(38510667-38510755)
chr5 (32-75)||(38511496-38511539)
[»] chr4 (1 HSPs)
chr4 (56-125)||(38995191-38995262)
[»] chr2 (1 HSPs)
chr2 (34-77)||(29265475-29265518)
[»] chr6 (2 HSPs)
chr6 (34-78)||(6171749-6171793)
chr6 (49-114)||(10594338-10594404)


Alignment Details
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 30489659 - 30489533
Alignment:
Q  1 aaatttaaaaacaaataagttattaatcataataatggaaagtcagaaggttgaggggctcatatcaagtgtaaattatgaaatctgtcacttcgggaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  30489659 aaatttaaaaacaaataagttattaatcataataatggaaagtcagaaggttgaggggctcatatcaagtgtaaattatgaaatctgtcactgcggtaaa 30489560  T
Q  101 aatcccaattcaatttgatgggactgt 127  Q
    || ||||||||||||||||||||||||    
T  30489559 aaacccaattcaatttgatgggactgt 30489533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 30520470 - 30520352
Alignment:
Q  9 aaacaaataagttattaatcataataatggaaagtcagaaggttgaggggctcatatcaagtgtaaattatgaaatctgtcacttcgggaaaaatcccaa 108  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||    
T  30520470 aaacaaataagttattaatcataataatggaaggtcagaaggttgaggggctcatatcaagtgtaaattatgaaatctgtcactgcaggaaaaaacccaa 30520371  T
Q  109 ttcaatttgatgggactgt 127  Q
    |||||||||| ||||||||    
T  30520370 ttcaatttgaagggactgt 30520352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 274 - 361
Target Start/End: Complemental strand, 30489386 - 30489299
Alignment:
Q  274 gttgatattgataaatggagagaatcctaactctgatagaagttggattatgattttccgattaaattgggtgtttcccactacagac 361  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30489386 gttgatactgataaatggagagaatcctaactctgatagaagttggattatgattttccgattaaattgggtgtttcccactacagac 30489299  T

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Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 30489493 - 30489417
Alignment:
Q  167 tatgagatgccaaagccaaacccctttggtgaaaagggtatgggtatggcggcaccttcaagttctaaccttcatta 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30489493 tatgagatgccaaagccaaacccctttggtgaaaagggtatgggtatggcggcaccttcaagttctaaccttcatta 30489417  T

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Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 274 - 361
Target Start/End: Complemental strand, 30520217 - 30520130
Alignment:
Q  274 gttgatattgataaatggagagaatcctaactctgatagaagttggattatgattttccgattaaattgggtgtttcccactacagac 361  Q
    |||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  30520217 gttgatattgataaatggagaggattctaactctgatagaagttgggttatgattttccgattaaattgggtatttcccactacagac 30520130  T

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Target: chr3; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 274 - 361
Target Start/End: Complemental strand, 30485741 - 30485654
Alignment:
Q  274 gttgatattgataaatggagagaatcctaactctgatagaagttggattatgattttccgattaaattgggtgtttcccactacagac 361  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||| |||||||||| ||||    
T  30485741 gttgatattgataaatggagaggatcctaactctgatagaagttgggttatgattttctgaataaattgggtatttcccactaaagac 30485654  T

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Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 274 - 361
Target Start/End: Complemental strand, 30505232 - 30505145
Alignment:
Q  274 gttgatattgataaatggagagaatcctaactctgatagaagttggattatgattttccgattaaattgggtgtttcccactacagac 361  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||  |||| |||| |||||||||| ||||    
T  30505232 gttgatattgataaatggagaggatcctaactctgatagaagttgggttatgattttccgaacaaatagggtatttcccactaaagac 30505145  T

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Target: chr3; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 274 - 361
Target Start/End: Complemental strand, 30515998 - 30515911
Alignment:
Q  274 gttgatattgataaatggagagaatcctaactctgatagaagttggattatgattttccgattaaattgggtgtttcccactacagac 361  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||  |||||||||| ||||    
T  30515998 gttgatattgataaatggagaggatcctaactctgatagaagttgggttatgattttctgaataaattgggcatttcccactaaagac 30515911  T

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Target: chr3; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 30520312 - 30520242
Alignment:
Q  167 tatgagatgccaaagccaaacccctttggtgaaaagggtatgggtatggcggcaccttcaagttctaaccttcatta 243  Q
    |||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||    
T  30520312 tatgagatgccaaagccaaacccctttggtgaaaagggt------atggcggcaccttcaagttctaaccttcatta 30520242  T

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Target: chr3; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 30505497 - 30505370
Alignment:
Q  4 tttaaaaacaaataagttattaatcataataat------ggaaagtcagaaggttgaggggctcatatcaagtgtaaattatgaaa--tctgtcacttcg 95  Q
    ||||||||||||||||||| |||| ||||||||      ||||| |||||| ||||||||||||||||||||||||||||| ||||  |||||||| |      
T  30505497 tttaaaaacaaataagttaataataataataataatgatggaaaatcagaaagttgaggggctcatatcaagtgtaaattaagaaagctctgtcac-tgt 30505399  T
Q  96 ggaaaaatcccaattcaatttgatgggac 124  Q
    ||||||| ||||||||||| ||| |||||    
T  30505398 ggaaaaaacccaattcaatatgaagggac 30505370  T

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Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 30516247 - 30516177
Alignment:
Q  9 aaacaaataagttattaatcataataatggaaagtcagaaggttgaggggctcatatcaagtgtaaattatgaaa 83  Q
    |||||||||||   ||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  30516247 aaacaaataag---ttaataataataatggaaaatcagaaggttga-gggctcatatcaagtgtaaattatgaaa 30516177  T

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Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 167 - 239
Target Start/End: Complemental strand, 30516093 - 30516027
Alignment:
Q  167 tatgagatgccaaagccaaacccctttggtgaaaagggtatgggtatggcggcaccttcaagttctaaccttc 239  Q
    |||||||| ||||||||||||||||||||||||||||||      ||||||||| ||||||||||||||||||    
T  30516093 tatgagataccaaagccaaacccctttggtgaaaagggt------atggcggcaacttcaagttctaaccttc 30516027  T

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Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 30522328 - 30522226
Alignment:
Q  24 taatcataataatggaaagtcagaaggttgaggggctcatatcaagtgtaaattatgaa--atctgtcacttcgggaaaaatcccaattcaatttgatgg 121  Q
    ||||||||| ||| |||| ||||||| | ||||||||||||||||||||||||| ||||  ||||||||||  ||| |||| |  |||||||||||| ||    
T  30522328 taatcataaaaatagaaaatcagaagatcgaggggctcatatcaagtgtaaattttgaaagatctgtcactgtggggaaaacctgaattcaatttgaagg 30522229  T
Q  122 gac 124  Q
    |||    
T  30522228 gac 30522226  T

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Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 30525356 - 30525282
Alignment:
Q  8 aaaacaaataagttattaatcataataatggaaagtcagaaggttgaggggctcatatcaagtgtaaattatgaa 82  Q
    |||||||| |||||| |||||| || |||  ||| |||||||||||||||||||||||||||||| |||| ||||    
T  30525356 aaaacaaaaaagttaataatcaaaacaatataaaatcagaaggttgaggggctcatatcaagtgtgaattgtgaa 30525282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 30487476 - 30487388
Alignment:
Q  38 gaaagtcagaaggttgaggggctcatatcaagtgtaaattatgaaa--tctgtcacttcgggaaaaatcccaattcaatttgatgggac 124  Q
    |||| |||||||||||||||||||||||||||  ||||||||||||  |||| ||||   ||||||| |||||| |||||||| |||||    
T  30487476 gaaaatcagaaggttgaggggctcatatcaaggataaattatgaaagctctgccactgtaggaaaaaacccaatccaatttgaagggac 30487388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 30503604 - 30503504
Alignment:
Q  26 atcataataatggaaagtcagaaggttgaggggctcatatcaagtgtaaattatg--aaatctgtcacttcgggaaaaatcccaattcaatttgatggga 123  Q
    ||||||| |||||||| | ||||||||||||||||||||| ||||||||||| ||  | |||| |||||   |||||||  |||||||||||||| ||||    
T  30503604 atcataagaatggaaaatgagaaggttgaggggctcatatgaagtgtaaattttgatagatctatcactgtaggaaaaaatccaattcaatttgaaggga 30503505  T
Q  124 c 124  Q
    |    
T  30503504 c 30503504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 342
Target Start/End: Complemental strand, 30506690 - 30506621
Alignment:
Q  274 gttgatattgataaatggagagaatcctaactctgatagaagtt-ggattatgattttccgattaaattg 342  Q
    |||||||||| |||||||||  |||||||||||||||||||||| || || ||||||||||||| |||||    
T  30506690 gttgatattggtaaatggagcaaatcctaactctgatagaagttagggttctgattttccgattgaattg 30506621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 30505327 - 30505285
Alignment:
Q  167 tatgagatgccaaagccaaacccctttggtgaaaagggtatgg 209  Q
    |||||||||||||||||| |||| |||||||||||||||||||    
T  30505327 tatgagatgccaaagccagacccttttggtgaaaagggtatgg 30505285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 30487815 - 30487747
Alignment:
Q  8 aaaacaaataagttattaatcataataatggaaagtcagaaggttgaggggctcatatcaagtgtaaatt 77  Q
    |||||||| |||||| || ||| || ||| |||| | |||||||||||||||||||||||||||||||||    
T  30487815 aaaacaaa-aagttaatagtcacaaaaattgaaaataagaaggttgaggggctcatatcaagtgtaaatt 30487747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 30491771 - 30491711
Alignment:
Q  8 aaaacaaataagttattaatcataataatggaaagtcagaaggttgaggggctcatatcaa 68  Q
    |||||||| |||||| ||||||||| |||  ||| |||||||||| |||||||||||||||    
T  30491771 aaaacaaaaaagttaataatcataacaatataaaatcagaaggttaaggggctcatatcaa 30491711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 30449885 - 30449815
Alignment:
Q  43 tcagaaggttgaggggctcatatcaagtgtaaattatgaa--atctgtcacttcgggaaaaatcccaattc 111  Q
    |||||| |||||||||||||||||||||||||| | ||||  |||| |||||  |||||||| ||||||||    
T  30449885 tcagaatgttgaggggctcatatcaagtgtaaaatttgaaagatctatcactgtgggaaaaaacccaattc 30449815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 274 - 317
Target Start/End: Complemental strand, 30482935 - 30482892
Alignment:
Q  274 gttgatattgataaatggagagaatcctaactctgatagaagtt 317  Q
    ||||||||||||||||||||  |||||||| |||||||||||||    
T  30482935 gttgatattgataaatggagcaaatcctaaatctgatagaagtt 30482892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 30483515 - 30483464
Alignment:
Q  26 atcataataatggaaagtcagaaggttgaggggctcatatcaagtgtaaatt 77  Q
    |||||||||||  ||| | ||||||||||||||||||||| |||||||||||    
T  30483515 atcataataataaaaaatgagaaggttgaggggctcatatgaagtgtaaatt 30483464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 202
Target Start/End: Original strand, 8411988 - 8412021
Alignment:
Q  169 tgagatgccaaagccaaacccctttggtgaaaag 202  Q
    |||||| |||||||||||||||||||||||||||    
T  8411988 tgagataccaaagccaaacccctttggtgaaaag 8412021  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 345
Target Start/End: Complemental strand, 30522089 - 30522017
Alignment:
Q  274 gttgatattgataaatggagagaatcctaactctgatagaagtt-ggattatgattttccgattaaattgggt 345  Q
    |||||||||| |||||||||  |||  |||||||| |||||||| || || ||||||||||||| ||||||||    
T  30522089 gttgatattggtaaatggagcaaattgtaactctggtagaagttagggttctgattttccgattgaattgggt 30522017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 280 - 361
Target Start/End: Original strand, 16933356 - 16933437
Alignment:
Q  280 attgataaatggagagaatcctaactctgatagaagttggattatgattttccgattaaattgggtgtttcccactacagac 361  Q
    |||||||||||||||  |||||||||| |||||||||||| || |||||| |||||| |||||||| |||||||||| ||||    
T  16933356 attgataaatggagaagatcctaactccgatagaagttgggttctgatttcccgattgaattgggtatttcccactaaagac 16933437  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 38510755 - 38510667
Alignment:
Q  32 ataatggaaagtcagaaggttgaggggctcatatcaagtgtaaattatgaa--atctgtcacttcggg--aaaaatcccaattcaattt 116  Q
    ||||| |||| |||| |||||||||||||||||||||||||||||| ||||  ||||||||||  |||  ||||| |||||||||||||    
T  38510755 ataatagaaaatcagtaggttgaggggctcatatcaagtgtaaattttgaaagatctgtcactgtgggaaaaaaaacccaattcaattt 38510667  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 38511539 - 38511496
Alignment:
Q  32 ataatggaaagtcagaaggttgaggggctcatatcaagtgtaaa 75  Q
    ||||| |||| |||||||||||||||||||||||||||||||||    
T  38511539 ataatagaaaatcagaaggttgaggggctcatatcaagtgtaaa 38511496  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 56 - 125
Target Start/End: Original strand, 38995191 - 38995262
Alignment:
Q  56 gggctcatatcaagtgtaaattatgaa--atctgtcacttcgggaaaaatcccaattcaatttgatgggact 125  Q
    |||||||||||||||||||||| ||||  |||||||||   |||||||| ||||||||||||||| ||||||    
T  38995191 gggctcatatcaagtgtaaattttgaaagatctgtcacagtgggaaaaaacccaattcaatttgaagggact 38995262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 29265518 - 29265475
Alignment:
Q  34 aatggaaagtcagaaggttgaggggctcatatcaagtgtaaatt 77  Q
    |||||||| | |||||||||||||||||||||||||||||||||    
T  29265518 aatggaaaatgagaaggttgaggggctcatatcaagtgtaaatt 29265475  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 6171793 - 6171749
Alignment:
Q  34 aatggaaagtcagaaggttgaggggctcatatcaagtgtaaatta 78  Q
    |||||||| ||||||||| ||||| ||||||||||| ||||||||    
T  6171793 aatggaaaatcagaaggtggagggtctcatatcaagagtaaatta 6171749  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 10594404 - 10594338
Alignment:
Q  49 ggttgaggggctcatatcaagtgtaaattatgaa--atctgtcacttcgggaaaaatcccaattcaat 114  Q
    |||||| |||||||||||||||||||||| ||||  ||||||||||   ||||||| |||||||||||    
T  10594404 ggttgaagggctcatatcaagtgtaaattttgaaagatctgtcactgtaggaaaaa-cccaattcaat 10594338  T

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