View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21144_high_5 (Length: 268)
Name: NF21144_high_5
Description: NF21144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21144_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 3734270 - 3734007
Alignment:
| Q |
1 |
cgagttatgtgataacaacttatgaaggcatgcacacccatccaaattcttgctagctcaaacataatatgaagaagttcttt-------------acta |
87 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3734270 |
cgagttatgtgataacaacttatgaaggcatgcacacccatccaaattcttgctagctcaaacataatatgaagaagttctttgctgcatgctcttacta |
3734171 |
T |
|
| Q |
88 |
atgttactagtattcctacatgaaaatattcaaattcccaacaagtttgagtttgcaattgctcatgtacaatttaccttaaaaagggttttgaactttg |
187 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3734170 |
atgttactagtattcctacatgaaaatattcaaattcccaacaagtttgagtttgcaattgctcatgtacaatttactttaaaaagggttttgaactttg |
3734071 |
T |
|
| Q |
188 |
aagaatatatatacaaagcttagtcagcaaataactatacattactattcatctagattcggttatatt |
256 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3734070 |
aagaatatatatacaaagcttagtcagcaaataacta-----tactattcatctagattcggttatatt |
3734007 |
T |
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