View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21144_low_4 (Length: 312)
Name: NF21144_low_4
Description: NF21144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21144_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 153 - 295
Target Start/End: Original strand, 3734396 - 3734538
Alignment:
| Q |
153 |
caattaatttcatggtattccaatacatataccttggattagggctattcttaaccattttctttccatacttcctccatctgtacccatcatcaagtat |
252 |
Q |
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| T |
3734396 |
caattaatttcatggtattccaatatatataccttggattagggctattcttaaccattttctttccatacttcctccatctgtacccatcatcaagtat |
3734495 |
T |
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| Q |
253 |
ttcaatcagtgactttgttttgaatgcaactctttccttaact |
295 |
Q |
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| T |
3734496 |
ttcaatcagtgactttgttttgaatgcaactctttccttaact |
3734538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 3734248 - 3734348
Alignment:
| Q |
1 |
ataagttgttatcacataactcgaatcattattatctctctcaactcnnnnnnnnacaggacacccctccactgaacacctataataattcctgcaatca |
100 |
Q |
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| T |
3734248 |
ataagttgttatcacataactcgaatcattattatctctctcaactcttttttttacaggacacccctccactgaacacctataataattcctgcaatca |
3734347 |
T |
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| Q |
101 |
c |
101 |
Q |
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| T |
3734348 |
c |
3734348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 283
Target Start/End: Original strand, 48289018 - 48289119
Alignment:
| Q |
182 |
taccttggattagggctattcttaaccattttctttccatacttcctccatctgtacccatcatcaagtatttcaatcagtgactttgttttgaatgcaa |
281 |
Q |
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| T |
48289018 |
taccttggattggggctgtttttcaccatcttctttccgtacttcctccatctgaacccatcatccagaatttcaacctctgacttggttttgaatgcaa |
48289117 |
T |
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| Q |
282 |
ct |
283 |
Q |
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| T |
48289118 |
ct |
48289119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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