View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21145_high_11 (Length: 211)
Name: NF21145_high_11
Description: NF21145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21145_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 4314771 - 4314595
Alignment:
| Q |
17 |
aatatagagttgcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttgga |
116 |
Q |
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| T |
4314771 |
aatatagagttgcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttgga |
4314672 |
T |
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| Q |
117 |
attcacttttaagacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgct |
193 |
Q |
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| T |
4314671 |
attcacttttaagacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgct |
4314595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 4305909 - 4305733
Alignment:
| Q |
17 |
aatatagagttgcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttgga |
116 |
Q |
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| T |
4305909 |
aatatagagttgcttcatctagatttgaaggaaaaactggccggaaagaagttcttaattgttttggatgacgtttggactgaggattatgatgcttgga |
4305810 |
T |
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| Q |
117 |
attcacttttaagacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgct |
193 |
Q |
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| T |
4305809 |
aatcccttttaaggcctcttcagtacagtgacaaaggaagtaaaattcttgtaacaacccgtattaaaaaagttgct |
4305733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 193
Target Start/End: Original strand, 4253720 - 4253890
Alignment:
| Q |
23 |
gagttgcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttggaattcac |
122 |
Q |
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| T |
4253720 |
gagttgcttcatcgtgatttgaaggaaaaactgactggaaaaaagttcttaattgttttggatgatgtatggaccgaggattatgacagctggaattctc |
4253819 |
T |
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| Q |
123 |
ttttaagacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgct |
193 |
Q |
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| T |
4253820 |
ttttaaggcctcttcaatacggggctaagggaaataaaattcttgtaacaactcgtattgaaaaagttgct |
4253890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 38 - 193
Target Start/End: Original strand, 4246617 - 4246772
Alignment:
| Q |
38 |
gatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttggaattcacttttaagacctcttc |
137 |
Q |
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| T |
4246617 |
gatttgaaggaaaaactgactggaaaaaagttcttgattgttttggacgatgtttggatcaaggattataacagttggaattctcttatgatgcctcttc |
4246716 |
T |
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| Q |
138 |
atgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgct |
193 |
Q |
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| | || | | |||||| ||||||||||||||||| || ||| | ||||||||| |
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| T |
4246717 |
aatacggagctaagggaagcaaaattcttgtaacaacgcgtagtgataaagttgct |
4246772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 41933158 - 41933334
Alignment:
| Q |
17 |
aatatagagttgcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttgga |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||| | ||||||||||||||||| ||||||| |
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| T |
41933158 |
aatatagagttgcttcatctagatttgaaggaaaaactgtccggaaagaagttcttaattgttttagatgatttctggaccgaggattatgatgcttgga |
41933257 |
T |
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| Q |
117 |
attcacttttaagacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgct |
193 |
Q |
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|||| |||||||| |||||||| |||| |||| |||||||||||||||||||||||||| | ||||||||||||| |
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| T |
41933258 |
attctcttttaaggcctcttcaatatggtaccaagggaagtaaaattcttgtaacaacccatattaaaaaagttgct |
41933334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 30 - 175
Target Start/End: Complemental strand, 34802834 - 34802689
Alignment:
| Q |
30 |
ttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttggaattcacttttaag |
129 |
Q |
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|||||| |||||||||||| || |||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||| ||||||| ||| |||| |
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| T |
34802834 |
ttcatcaagatttgaaggagaagttggcgggaaagaagttcttaattgtattggatgatgtctggactgaggattatgacagttggaatattcttataag |
34802735 |
T |
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| Q |
130 |
acctcttcatgatggcaccaggggaagtaaaattcttgtaacaacc |
175 |
Q |
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||| |||| || || | |||||||||||||||||||||||| |
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| T |
34802734 |
gccttttcaatgcggaactaaaggaagtaaaattcttgtaacaacc |
34802689 |
T |
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