View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21145_high_12 (Length: 208)
Name: NF21145_high_12
Description: NF21145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21145_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 8e-94; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 3948770 - 3948947
Alignment:
| Q |
19 |
tatcagcttcagaacaggattttcataataagttcaatgattataacgttcacattgaatcttatcaagctatttatgtgtatccagggagcagtgttcc |
118 |
Q |
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| T |
3948770 |
tatcagcttcagaacaggattttcataataagttcaatgattataacgttcacattgaatcttatcaagctatttatgtgtatccagggagcagtgttcc |
3948869 |
T |
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| Q |
119 |
aaagtggttcgagtataagacaacaacggattttgtagtcatggatctatcttcttctacaccgcgttcccctttgct |
196 |
Q |
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| T |
3948870 |
aaagtggttcgtgtataagacaacaacggattttgtagtcatggatctatcttcttctacaccgcgttcccctttgct |
3948947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 3965784 - 3965962
Alignment:
| Q |
18 |
gtatcagcttcagaacaggattttcataataagttcaatgattataacgttcacattgaatcttatcaagctatttatgtgtatccagggagcagtgttc |
117 |
Q |
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| T |
3965784 |
gtatcagctttggaacatgattttcataataagttcaatgattataaggatcacaatgattcttatcaagcaatttacgtgtatccaggaaacagcgttc |
3965883 |
T |
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| Q |
118 |
caaagtggttcgagtataagacaacaacggattttgtagtcatggatctatcttcttctacaccgcgttcccctttgct |
196 |
Q |
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| T |
3965884 |
cagagtggtttgagtatatgacaacaacggattatgtagtcattgatctatcttcttctacatcaagttcccctttgct |
3965962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 82 - 189
Target Start/End: Complemental strand, 4016468 - 4016361
Alignment:
| Q |
82 |
atcaagctatttatgtgtatccagggagcagtgttccaaagtggttcgagtataagacaacaacggattttgtagtcatggatctatcttcttctacacc |
181 |
Q |
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| T |
4016468 |
atcaagcactttatgtgtatccagggagctgtgttccagattggtttgaatataagacaacaacggattatgtagccattgatctaccttcttctacatc |
4016369 |
T |
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| Q |
182 |
gcgttccc |
189 |
Q |
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| T |
4016368 |
gcattccc |
4016361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 127
Target Start/End: Complemental strand, 3804173 - 3804113
Alignment:
| Q |
68 |
tcacattgaatcttatcaagctatttatgtgtatcc-agggagcagtgttccaaagtggtt |
127 |
Q |
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| T |
3804173 |
tcacattgactcttatcaagctctttatgtgtatccaacggagcagtgttccaaagtggtt |
3804113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 149
Target Start/End: Original strand, 3922040 - 3922116
Alignment:
| Q |
73 |
ttgaatcttatcaagctatttatgtgtatccagggagcagtgttccaaagtggttcgagtataagacaacaacggat |
149 |
Q |
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| T |
3922040 |
ttgattcttatcaagcagtgtatgtgtatcctggaagtagtgttccaaagtggttggagtacaagacaacaatggat |
3922116 |
T |
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