View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21145_high_13 (Length: 201)
Name: NF21145_high_13
Description: NF21145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21145_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 9e-69; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 17086271 - 17086442
Alignment:
| Q |
16 |
aatatttagctttgagaactctagtgaagaaggaggaagagtttctaagaagctttcatctatgcttacctagcatcgtaagattaaaacc-ttcaagaa |
114 |
Q |
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| T |
17086271 |
aatatttagctttgagaactctagtgaagagggaggaagagttcttgagaagctttcatctatgcttacctagcattgtaagattaaaacctttcaagaa |
17086370 |
T |
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| Q |
115 |
catggaaattaacgtctccatgatccttacaagttgtcatcttatcc-accaattgacaatatgaccaccat |
185 |
Q |
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| T |
17086371 |
catggaaattaacatctccatgatccttacaagttgtcatcttatccaaccaattgacaatatgaccaccat |
17086442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 2901642 - 2901497
Alignment:
| Q |
16 |
aatatttagctttgagaactctagtgaagaaggaggaagagtttctaagaagctttcatctatgcttacctagcatcgtaagattaaaaccttcaagaac |
115 |
Q |
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| T |
2901642 |
aatatttatctttgagaactctagtgaggagaaaggaagagtttgtgaagagcttccatccttgattaccaagcatggcaaggttaaaaccttcaaggtc |
2901543 |
T |
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| Q |
116 |
atggaaattaacgtctccatgatccttacaagttgtcatcttatcc |
161 |
Q |
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| T |
2901542 |
acaaaaattaacaccaccatgatccttacaagtagtcatcttatcc |
2901497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 52843218 - 52843363
Alignment:
| Q |
16 |
aatatttagctttgagaactctagtgaagaaggaggaagagtttctaagaagctttcatctatgcttacctagcatcgtaagattaaaaccttcaagaac |
115 |
Q |
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| T |
52843218 |
aatatttagctttgagaactttggtgaggagagaggaagagtttgtgaggagcttccatccttatttacctagcatggcaaggttaaaaccttcaaggtc |
52843317 |
T |
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| Q |
116 |
atggaaattaacgtctccatgatccttacaagttgtcatcttatcc |
161 |
Q |
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| T |
52843318 |
acgaaagttgagaccaccgtgatccttacaagtagtcatcttatcc |
52843363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 1362196 - 1362100
Alignment:
| Q |
16 |
aatatttagctttgagaactctagtgaagaaggaggaagagtttctaagaagctttcatctatgcttacctagcatcgtaagattaaaaccttcaag |
112 |
Q |
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| T |
1362196 |
aatatttagctttgagaactttggtgaggagagaggaagagtctatgaggagcttccatccttgcttacctagcatggcaaggttaaaaccttcaag |
1362100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 38865076 - 38865010
Alignment:
| Q |
95 |
aagattaaaaccttcaagaacatggaaattaacgtctccatgatccttacaagttgtcatcttatcc |
161 |
Q |
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| T |
38865076 |
aagattataaccttcaagatcacggaacttaagacctccatgatccttacaaggtgtcatattatcc |
38865010 |
T |
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