View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21145_low_1 (Length: 606)

Name: NF21145_low_1
Description: NF21145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21145_low_1
NF21145_low_1
[»] chr5 (6 HSPs)
chr5 (191-592)||(27314805-27315195)
chr5 (18-97)||(27314392-27314471)
chr5 (116-193)||(27314760-27314835)
chr5 (211-259)||(9511927-9511975)
chr5 (511-587)||(24137457-24137535)
chr5 (211-269)||(11335326-11335384)
[»] chr1 (3 HSPs)
chr1 (212-293)||(3775076-3775155)
chr1 (249-329)||(3774978-3775058)
chr1 (511-592)||(3774484-3774567)
[»] chr3 (3 HSPs)
chr3 (211-269)||(42530811-42530869)
chr3 (511-587)||(22821032-22821110)
chr3 (121-158)||(42530816-42530853)
[»] chr7 (4 HSPs)
chr7 (263-411)||(10236694-10236836)
chr7 (511-595)||(46963229-46963315)
chr7 (511-586)||(24486650-24486727)
chr7 (511-544)||(17921417-17921450)
[»] chr4 (6 HSPs)
chr4 (213-265)||(24225694-24225746)
chr4 (511-592)||(54148135-54148218)
chr4 (214-300)||(24225661-24225749)
chr4 (511-539)||(7259070-7259098)
chr4 (511-592)||(16871511-16871594)
chr4 (511-592)||(24225912-24225995)
[»] chr2 (3 HSPs)
chr2 (511-592)||(8986787-8986870)
chr2 (211-270)||(38583929-38583987)
chr2 (281-322)||(2484620-2484661)
[»] chr8 (1 HSPs)
chr8 (511-587)||(5616789-5616867)
[»] chr6 (2 HSPs)
chr6 (511-544)||(18984358-18984391)
chr6 (506-592)||(33424148-33424236)
[»] scaffold0018 (1 HSPs)
scaffold0018 (512-544)||(31961-31993)


Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 191 - 592
Target Start/End: Original strand, 27314805 - 27315195
Alignment:
Q  191 attattgattatacttccctcccttttgatttttgtgattgattgcacttctccccattttgattcttcggtttgattgtttctgtcccatttgattctt 290  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27314805 attattgattatacttctctcccttttgatttttgtgattgattgcacttctccccattttgattcttcggtttgattgtttctgtcccttttgattctt 27314904  T
Q  291 ctgtttggttgcacctctctctattggttcttattatttatggtcgcttctccctaccggctcatttgtttggattgatttgatgacttgattcttctgt 390  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||||||||||||  |||||||||||| ||||| ||   ||||||| |       |    
T  27314905 ctgtttggttgcacctctctctattggttc---ttatttatggtcgcttctccctactagctcatttgtttagattggtt---tgacttggt-------t 27314991  T
Q  391 ttggatgaattctctctttgtatggtgatggttttggctgcactctctatgataattcactttcgttactactttccgttgattctattatcaactgatt 490  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  27314992 tttgatgaattctctctttgtatggtgatggttttggctgcactctctatgataactcactttcgttactactttccgttgattctactatcaactgatt 27315091  T
Q  491 tagtttannnnnnnnggataaatttgtaacaagcttaaaacttagtaagctttacctt--cgggtagtgttaagacttcatattatttaatatatttttg 588  Q
    |||||||        |||||||||||||||||||||||||||||||||||||||||||   |||||||||||| ||||||||||||||||||||||||||    
T  27315092 tagtttattttttttggataaatttgtaacaagcttaaaacttagtaagctttaccttgaggggtagtgttaaaacttcatattatttaatatatttttg 27315191  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 27314392 - 27314471
Alignment:
Q  18 tgattcaatttagtttgcaatgactcttttggtttgtatttgtgagtggcttaagtattccttctatccactcatttgta 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27314392 tgattcaatttagtttgcaatgactcttttggtttgtatttgtgagtggcttaagtattccttctatccactaatttgta 27314471  T

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Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 116 - 193
Target Start/End: Original strand, 27314760 - 27314835
Alignment:
Q  116 tcatattgattattctgattgattgcacttcttcccattttgactattattgatttaatacttctcccccttttgatt 193  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||| |||||||||||    
T  27314760 tcatattgattattctgattgattgcatttcttcccattttgactattattgatt--atacttctctcccttttgatt 27314835  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 9511927 - 9511975
Alignment:
Q  211 cccttttgatttttgtgattgattgcacttctccccattttgattcttc 259  Q
    ||||||||||| || ||||||||||||||||||||||| ||||||||||    
T  9511927 cccttttgattcttctgattgattgcacttctccccatattgattcttc 9511975  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 511 - 587
Target Start/End: Original strand, 24137457 - 24137535
Alignment:
Q  511 aatttgtaacaagcttaaaacttagtaagctttacctt--cgggtagtgttaagacttcatattatttaatatattttt 587  Q
    ||||||||||||||||||| |||||||||||||| |||   |||||||||||  |||| |||||||||| ||| |||||    
T  24137457 aatttgtaacaagcttaaagcttagtaagctttagcttgaggggtagtgttagaactttatattatttagtatgttttt 24137535  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 269
Target Start/End: Complemental strand, 11335384 - 11335326
Alignment:
Q  211 cccttttgatttttgtgattgattgcacttctccccattttgattcttcggtttgattg 269  Q
    ||||||||||| || ||||||||| ||||||||||| | |||||||||| | |||||||    
T  11335384 cccttttgattcttttgattgattacacttctccccctattgattcttctgattgattg 11335326  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 212 - 293
Target Start/End: Complemental strand, 3775155 - 3775076
Alignment:
Q  212 ccttttgatttttgtgattgattgcacttctccccattttgattcttcggtttgattgtttctgtcccatttgattcttctg 293  Q
    |||||||||| || |||||||||||  ||||||||||||||||||||| | | |||||||||| || | |||||||||||||    
T  3775155 ccttttgattcttttgattgattgc--ttctccccattttgattcttctgatcgattgtttctctctcttttgattcttctg 3775076  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 329
Target Start/End: Complemental strand, 3775058 - 3774978
Alignment:
Q  249 tttgattcttcggtttgattgtttctgtcccatttgattcttctgtttggttgcacctctctctattggttcttattattt 329  Q
    ||||||||||| ||||| ||| | || || | ||||||||| |||||||||||| || |||||||||| ||||||| ||||    
T  3775058 tttgattcttctgtttggttgctcctctctcttttgattctcctgtttggttgctccactctctattgattcttatgattt 3774978  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 511 - 592
Target Start/End: Complemental strand, 3774567 - 3774484
Alignment:
Q  511 aatttgtaacaagcttaaaacttagtaagctttacctt--cgggtagtgttaagacttcatattatttaatatatttttggtat 592  Q
    |||||||||||||| |||| |||||||||||||| |||   ||||| |||||  | || ||||| |||||||| ||||||||||    
T  3774567 aatttgtaacaagcataaagcttagtaagctttaacttgaggggtaatgttagaagtttatattttttaatatgtttttggtat 3774484  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 42530811 - 42530869
Alignment:
Q  211 cccttttgatttttgtgattgattgcacttctccccattttgattcttcggtttgattg 269  Q
    ||||||||||| || ||||||||||||||||| ||| |||||||||||| | |||||||    
T  42530811 cccttttgattcttctgattgattgcacttcttccccttttgattcttctgattgattg 42530869  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 511 - 587
Target Start/End: Complemental strand, 22821110 - 22821032
Alignment:
Q  511 aatttgtaacaagcttaaaacttagtaagctttaccttc--gggtagtgttaagacttcatattatttaatatattttt 587  Q
    ||||||||||||| ||||| ||||||| |||||| |||   |||||||||||  |||| |||||||||||||| |||||    
T  22821110 aatttgtaacaagtttaaagcttagtaggctttagctttaggggtagtgttagaactttatattatttaatatcttttt 22821032  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 42530816 - 42530853
Alignment:
Q  121 ttgattattctgattgattgcacttcttcccattttga 158  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  42530816 ttgattcttctgattgattgcacttcttccccttttga 42530853  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 411
Target Start/End: Original strand, 10236694 - 10236836
Alignment:
Q  263 ttgattgtttctgtcccatttgattcttctgtttggttgcacctctctctattggttcttattatttatggtcgcttctccctaccggctcatttgtttg 362  Q
    |||||||||| | |||| | ||||||||||| ||| | |  ||||| ||||||||||||| |    |||||| ||||||||||| ||| || ||||||||    
T  10236694 ttgattgtttatctcccttgtgattcttctggttgatcgttcctctttctattggttcttcta---tatggttgcttctccctagcggttcttttgtttg 10236790  T
Q  363 gattgatttgatgacttgattcttctgtttggatgaattctctctttgt 411  Q
    ||||  ||   ||||||| ||||| ||||||||||| || |||||||||    
T  10236791 gatttgtt---tgacttggttcttttgtttggatgatttttctctttgt 10236836  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 511 - 595
Target Start/End: Complemental strand, 46963315 - 46963229
Alignment:
Q  511 aatttgtaacaagcttaaaacttagtaagctttacctt--cgggtagtgttaagacttcatattatttaatatatttttggtatatt 595  Q
    ||||||||||||| ||||| |||||||||||| | |||   |||||||||||  |||| |||||||||| ||| ||||| |||||||    
T  46963315 aatttgtaacaagtttaaagcttagtaagcttcagcttgaggggtagtgttagaactttatattatttagtatgtttttcgtatatt 46963229  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 511 - 586
Target Start/End: Complemental strand, 24486727 - 24486650
Alignment:
Q  511 aatttgtaacaagcttaaaacttagtaagctttaccttc--gggtagtgttaagacttcatattatttaatatatttt 586  Q
    |||||||||||| |||||| |||||||||||||| ||||  |||||||||||  | || |||||||||| ||| ||||    
T  24486727 aatttgtaacaaacttaaagcttagtaagctttaacttcaagggtagtgttagaagtttatattatttagtatgtttt 24486650  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 544
Target Start/End: Complemental strand, 17921450 - 17921417
Alignment:
Q  511 aatttgtaacaagcttaaaacttagtaagcttta 544  Q
    ||||||||||||||||||| ||||||||||||||    
T  17921450 aatttgtaacaagcttaaagcttagtaagcttta 17921417  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 265
Target Start/End: Original strand, 24225694 - 24225746
Alignment:
Q  213 cttttgatttttgtgattgattgcacttctccccattttgattcttcggtttg 265  Q
    ||||||||| || |||||||||||| |||||||| |||||||||||| |||||    
T  24225694 cttttgattcttctgattgattgcatttctcccccttttgattcttctgtttg 24225746  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 511 - 592
Target Start/End: Original strand, 54148135 - 54148218
Alignment:
Q  511 aatttgtaacaagcttaaaacttagtaagctttacctt--cgggtagtgttaagacttcatattatttaatatatttttggtat 592  Q
    ||||||||||||||||||| |||||||||||| | |||   |||||||||||| | || |||||||||| ||| ||||| ||||    
T  54148135 aatttgtaacaagcttaaagcttagtaagcttcagcttgaggggtagtgttaaaagtttatattatttactatgtttttcgtat 54148218  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 300
Target Start/End: Original strand, 24225661 - 24225749
Alignment:
Q  214 ttttgatttttgtgattgattgcacttctccccattttgattcttcggtttgattg--tttctgtcccatttgattcttctgtttggtt 300  Q
    |||||||| || ||||| ||||||||| | ||  |||||||||||| | |||||||  |||||  ||| ||||||||||||||||||||    
T  24225661 ttttgattcttctgattcattgcactttttcctcttttgattcttctgattgattgcatttctcccccttttgattcttctgtttggtt 24225749  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 511 - 539
Target Start/End: Complemental strand, 7259098 - 7259070
Alignment:
Q  511 aatttgtaacaagcttaaaacttagtaag 539  Q
    |||||||||||||||||||||||||||||    
T  7259098 aatttgtaacaagcttaaaacttagtaag 7259070  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 511 - 592
Target Start/End: Original strand, 16871511 - 16871594
Alignment:
Q  511 aatttgtaacaagcttaaaacttagtaagctttacctt--cgggtagtgttaagacttcatattatttaatatatttttggtat 592  Q
    ||||||||||||| ||||| |||||||||||| | |||   |||||||||||  |||| |||||||||| ||| ||||| ||||    
T  16871511 aatttgtaacaagtttaaagcttagtaagcttcagcttgaggggtagtgttagaactttatattatttagtatgtttttcgtat 16871594  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 511 - 592
Target Start/End: Original strand, 24225912 - 24225995
Alignment:
Q  511 aatttgtaacaagcttaaaacttagtaagctttaccttc--gggtagtgttaagacttcatattatttaatatatttttggtat 592  Q
    |||||||||  ||||| ||||||||||||||||| ||||  ||||||||||   | || |||||||||| ||||||||| ||||    
T  24225912 aatttgtaatgagcttcaaacttagtaagctttaacttcaggggtagtgttcgaagtttatattatttagtatatttttcgtat 24225995  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 511 - 592
Target Start/End: Original strand, 8986787 - 8986870
Alignment:
Q  511 aatttgtaacaagcttaaaacttagtaagctttacctt--cgggtagtgttaagacttcatattatttaatatatttttggtat 592  Q
    ||||||||||||||||||| |||||||||||| | |||   |||||||||||  |||| |||||||||| ||| ||||| ||||    
T  8986787 aatttgtaacaagcttaaagcttagtaagcttcagcttgaggggtagtgttagaactttatattatttagtatgtttttcgtat 8986870  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 38583987 - 38583929
Alignment:
Q  211 cccttttgatttttgtgattgattgcacttctccccattttgattcttcggtttgattgt 270  Q
    ||||||||||| || |||||||||||||||||||||  ||||||||||| | ||||||||    
T  38583987 cccttttgattcttctgattgattgcacttctcccc-ctttgattcttctgattgattgt 38583929  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 2484620 - 2484661
Alignment:
Q  281 tttgattcttctgtttggttgcacctctctctattggttctt 322  Q
    |||||||||||| ||||||||| ||||| |||||||||||||    
T  2484620 tttgattcttctatttggttgctcctctttctattggttctt 2484661  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 511 - 587
Target Start/End: Original strand, 5616789 - 5616867
Alignment:
Q  511 aatttgtaacaagcttaaaacttagtaagctttacctt--cgggtagtgttaagacttcatattatttaatatattttt 587  Q
    ||||||||||||| ||||| ||||||| |||||| |||   |||||||||||  |||| |||||||||||||| |||||    
T  5616789 aatttgtaacaagtttaaagcttagtaggctttagctttaggggtagtgttagaactttatattatttaatatcttttt 5616867  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 544
Target Start/End: Original strand, 18984358 - 18984391
Alignment:
Q  511 aatttgtaacaagcttaaaacttagtaagcttta 544  Q
    ||||||||||||||||||| ||||||||||||||    
T  18984358 aatttgtaacaagcttaaaccttagtaagcttta 18984391  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 592
Target Start/End: Complemental strand, 33424236 - 33424148
Alignment:
Q  506 ggataaatttgtaacaagcttaaaacttagtaagctttacctt--cgggtagtgttaagacttcatattatttaatatatttttggtat 592  Q
    |||| |||||||||||| |||||| |||||||||||| | |||   |||||||||||  |||| |||||||||| ||| ||||| ||||    
T  33424236 ggattaatttgtaacaaacttaaagcttagtaagcttcaacttgaggggtagtgttagaactttatattatttagtatgtttttcgtat 33424148  T

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Target: scaffold0018 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 544
Target Start/End: Original strand, 31961 - 31993
Alignment:
Q  512 atttgtaacaagcttaaaacttagtaagcttta 544  Q
    |||||||||||||||||| ||||||||||||||    
T  31961 atttgtaacaagcttaaagcttagtaagcttta 31993  T

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