View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21145_low_10 (Length: 247)

Name: NF21145_low_10
Description: NF21145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21145_low_10
NF21145_low_10
[»] chr3 (3 HSPs)
chr3 (42-242)||(249302-249502)
chr3 (84-231)||(19142271-19142418)
chr3 (84-161)||(38396758-38396835)
[»] chr2 (2 HSPs)
chr2 (77-225)||(5546317-5546465)
chr2 (84-117)||(25524908-25524941)
[»] chr6 (1 HSPs)
chr6 (84-165)||(5652927-5653008)
[»] chr4 (1 HSPs)
chr4 (63-165)||(45671438-45671540)
[»] chr7 (1 HSPs)
chr7 (63-165)||(5230008-5230110)
[»] chr5 (3 HSPs)
chr5 (77-231)||(20543502-20543656)
chr5 (95-132)||(13810992-13811029)
chr5 (95-132)||(13959677-13959714)
[»] chr8 (4 HSPs)
chr8 (63-144)||(12811923-12812004)
chr8 (84-161)||(34830906-34830983)
chr8 (86-219)||(36350223-36350356)
chr8 (85-154)||(27527480-27527549)
[»] chr1 (1 HSPs)
chr1 (83-146)||(46039606-46039669)


Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 42 - 242
Target Start/End: Original strand, 249302 - 249502
Alignment:
Q  42 gaacatacttgttgtttgaatattcataaagtctgccacggctggagaagacaatgagagcaacttcagcatcacacaaaactgatagttcataagcttt 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  249302 gaacatacttgttgtttgaatattcataaagtctgccacggctggagaagacaatgagagcaacttcagcatcacacaaaactgatagttcataagcttt 249401  T
Q  142 cttcagaagtccattccttctcttgcaaaaagtcacttgcctatttgttgtattctcaatcctttttatctcaatctttcccctccccatcctatgcttc 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  249402 cttcagaagtccattccttctcttgcaaaaagtcacttgcctatttgttgtattctcaatcctttttatctcaatctttcccctccccatcttatgtttc 249501  T
Q  242 t 242  Q
    |    
T  249502 t 249502  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 231
Target Start/End: Original strand, 19142271 - 19142418
Alignment:
Q  84 tggagaagacaatgagagcaacttcagcatcacacaaaactgatagttcataagctttcttcagaagtccattccttctcttgcaaaaagtcacttgcct 183  Q
    ||||||||||||  ||||||||||| |||||||| | ||| |||| |||||||||||||||||  | |||||| | ||  ||||||||||| ||||||||    
T  19142271 tggagaagacaacaagagcaacttcggcatcacaaagaacggataattcataagctttcttcaacaatccattgcgtcgtttgcaaaaagtgacttgcct 19142370  T
Q  184 atttgttgtattctcaatcctttttatctcaatctttcccctccccat 231  Q
    ||| || || || |||||||| || || ||||| ||||| || |||||    
T  19142371 attggtagtgttttcaatcctcttgatttcaatttttcctcttcccat 19142418  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 161
Target Start/End: Complemental strand, 38396835 - 38396758
Alignment:
Q  84 tggagaagacaatgagagcaacttcagcatcacacaaaactgatagttcataagctttcttcagaagtccattccttc 161  Q
    |||||||||| ||||||||||| || |||||||| | ||| || |||||||||||||| |||| ||| ||||| ||||    
T  38396835 tggagaagacgatgagagcaacctctgcatcacaaagaacagaaagttcataagcttttttcaaaagaccatttcttc 38396758  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 225
Target Start/End: Complemental strand, 5546465 - 5546317
Alignment:
Q  77 ccacggctggagaagacaatgagagcaacttcagcatcacacaaaactgatagttcataagctttcttcagaagtccattccttctcttgcaaaaagtca 176  Q
    |||||||| |||||||| || ||||||||||| |||||||| | ||| |||| |||||| ||||||||||  |  ||||| ||||| ||||| ||||| |    
T  5546465 ccacggctagagaagactataagagcaacttctgcatcacaaagaacagataattcatatgctttcttcaacaaaccatttcttcttttgcagaaagtta 5546366  T
Q  177 cttgcctatttgttgtattctcaatcctttttatctcaatctttcccct 225  Q
    |||| | ||| || || || ||||||||||| |||||||||||||||||    
T  5546365 cttgacgattcgtcgtgttttcaatccttttgatctcaatctttcccct 5546317  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 117
Target Start/End: Complemental strand, 25524941 - 25524908
Alignment:
Q  84 tggagaagacaatgagagcaacttcagcatcaca 117  Q
    ||||||||||||| ||||||||||||||||||||    
T  25524941 tggagaagacaataagagcaacttcagcatcaca 25524908  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 84 - 165
Target Start/End: Complemental strand, 5653008 - 5652927
Alignment:
Q  84 tggagaagacaatgagagcaacttcagcatcacacaaaactgatagttcataagctttcttcagaagtccattccttctctt 165  Q
    ||||||||| ||| |||||||||||||||||||| | ||| |||| ||||||||||||||| ||||||||||| ||||||||    
T  5653008 tggagaagataataagagcaacttcagcatcacaaagaacagataattcataagctttcttaagaagtccatttcttctctt 5652927  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 165
Target Start/End: Complemental strand, 45671540 - 45671438
Alignment:
Q  63 attcataaagtctgccacggctggagaagacaatgagagcaacttcagcatcacacaaaactgatagttcataagctttcttcagaagtccattccttct 162  Q
    ||||||| ||| |||||||| |||||||||  || |||||||||||||||||||| | |||||| ||||||||||| ||||| || |  ||||| |||||    
T  45671540 attcatatagtttgccacggttggagaagatgataagagcaacttcagcatcacaaagaactgaaagttcataagccttcttgagtacaccatttcttct 45671441  T
Q  163 ctt 165  Q
    |||    
T  45671440 ctt 45671438  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 165
Target Start/End: Complemental strand, 5230110 - 5230008
Alignment:
Q  63 attcataaagtctgccacggctggagaagacaatgagagcaacttcagcatcacacaaaactgatagttcataagctttcttcagaagtccattccttct 162  Q
    ||||||||||  | |||||  |||||||||  || |||||||| ||||||||||| | ||| || ||||||||||||||||| ||||| ||||| |||||    
T  5230110 attcataaagctttccacgagtggagaagatgataagagcaacctcagcatcacaaagaacagaaagttcataagctttcttaagaagaccatttcttct 5230011  T
Q  163 ctt 165  Q
    |||    
T  5230010 ctt 5230008  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 231
Target Start/End: Original strand, 20543502 - 20543656
Alignment:
Q  77 ccacggctggagaagacaatgagagcaacttcagcatcacacaaaactgatagttcataagctttcttcagaagtccattccttctcttgcaaaaagtca 176  Q
    |||||||| ||||| | |||||||||||| ||||||||||| |  |  || ||||||||||| |||||||| | |||||| ||||||||   ||| || |    
T  20543502 ccacggctagagaaaataatgagagcaacctcagcatcacaaaggagagagagttcataagccttcttcagcattccatttcttctctttgcaaatgtaa 20543601  T
Q  177 cttgcctatttgttgtattctcaatcctttttatctcaatctttcccctccccat 231  Q
    |||| | |||| || | ||||||||||| |||| ||| | ||||||||| |||||    
T  20543602 cttgacgatttattttgttctcaatcctctttagctctacctttcccctacccat 20543656  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 13810992 - 13811029
Alignment:
Q  95 atgagagcaacttcagcatcacacaaaactgatagttc 132  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  13810992 atgagagcaacatcagcatcacacaaaactgaaagttc 13811029  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 13959714 - 13959677
Alignment:
Q  95 atgagagcaacttcagcatcacacaaaactgatagttc 132  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  13959714 atgagagcaacatcagcatcacacaaaactgaaagttc 13959677  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 12811923 - 12812004
Alignment:
Q  63 attcataaagtctgccacggctggagaagacaatgagagcaacttcagcatcacacaaaactgatagttcataagctttctt 144  Q
    ||||||| ||| |||||||||| ||||| |  || || ||||||||||||||||| | ||| || |||||||||||||||||    
T  12811923 attcatagagtttgccacggctagagaaaatgataagggcaacttcagcatcacagagaacagacagttcataagctttctt 12812004  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 34830906 - 34830983
Alignment:
Q  84 tggagaagacaatgagagcaacttcagcatcacacaaaactgatagttcataagctttcttcagaagtccattccttc 161  Q
    |||||||||  || |||||||||||||||||||| | ||| || |||||||||||||| |||| ||| || |||||||    
T  34830906 tggagaagatgataagagcaacttcagcatcacaaagaacagaaagttcataagcttttttcaaaagaccgttccttc 34830983  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 219
Target Start/End: Complemental strand, 36350356 - 36350223
Alignment:
Q  86 gagaagacaatgagagcaacttcagcatcacacaaaactgatagttcataagctttcttcagaagtccattccttctcttgcaaaaagtcacttgcctat 185  Q
    |||||||| || |||||||||||||||||||| |  || |||| |||||| || ||||| || |  ||||| || | |||||| || || ||||| | ||    
T  36350356 gagaagactataagagcaacttcagcatcacaaagcacagataattcatatgccttcttaagcaagccatttctacgcttgcagaacgtaacttgacgat 36350257  T
Q  186 ttgttgtattctcaatcctttttatctcaatctt 219  Q
    | ||||| ||||||||||| || |||||||||||    
T  36350256 tcgttgtgttctcaatcctcttgatctcaatctt 36350223  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 27527480 - 27527549
Alignment:
Q  85 ggagaagacaatgagagcaacttcagcatcacacaaaactgatagttcataagctttcttcagaagtcca 154  Q
    |||||||||||| | |||||||||||||||||| | ||| || |  |||| ||||||||| |||||||||    
T  27527480 ggagaagacaatcaaagcaacttcagcatcacaaagaacagagatctcatgagctttcttgagaagtcca 27527549  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 46039606 - 46039669
Alignment:
Q  83 ctggagaagacaatgagagcaacttcagcatcacacaaaactgatagttcataagctttcttca 146  Q
    ||||||||||  || |||||||||||||||||||| || || || |||||| ||||||||||||    
T  46039606 ctggagaagatgataagagcaacttcagcatcacataacacagaaagttcaaaagctttcttca 46039669  T

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