View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21145_low_2 (Length: 515)
Name: NF21145_low_2
Description: NF21145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21145_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 17 - 442
Target Start/End: Complemental strand, 36903530 - 36903105
Alignment:
| Q |
17 |
aacctgtgcaatcttattatcttcaatatcaactatcttctgttccaacgcgttgaattcatctacgatttctgatatcgcattcaatctcccatccctg |
116 |
Q |
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| T |
36903530 |
aacctgtgtaatattattctcttcaatctcaactatcttctgttccaacgcgttgaattcgtctacgatttctgatatcgcattcaatctcccatccctg |
36903431 |
T |
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| Q |
117 |
attttaaaaaatttaacaattaggttatgttttatttttccttgatgatttagcagaaatggttgaagaagtgagagtaacgaacgaacctgtcgagaca |
216 |
Q |
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| T |
36903430 |
attttaaaaaatttaacaattaggttatgttttatttttccttgatgatttagcagaaatggttgaagaagtgagagtaacgaacgaacctgtcgagaca |
36903331 |
T |
|
| Q |
217 |
gaaattgagaagagctccaaggaaaaactcggttcgatgaggatcgggtttgagaagatcggcaaagttaaatgtgtatttcttaggacattcaagtaag |
316 |
Q |
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| T |
36903330 |
gaaattgagaagagctccaaggaaaaactcggttcgatgaggatcgggtttgagaagatcggcaaagttaaatgtgtatttcttaggacattcaagtaag |
36903231 |
T |
|
| Q |
317 |
ttaagcatttccttgatcttgttataaagcttgatagcatgaatagatccaacgtgaagatcgggattctcgagatgctctagtgcatcgaaatcaagct |
416 |
Q |
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| T |
36903230 |
ttaagcatttccttgatcttgttgtaaagcttgatagcatgaatagatccaacgtgaaggtcgggattctcgagatgctctagtgcatcgaaatcaagct |
36903131 |
T |
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| Q |
417 |
gtccgttgtcttcgctgtgagaaatt |
442 |
Q |
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| T |
36903130 |
gtccgttgtcttcgctgtgagaaatt |
36903105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 215 - 441
Target Start/End: Original strand, 36892200 - 36892426
Alignment:
| Q |
215 |
cagaaattgagaagagctccaaggaaaaactcggttcgatgaggatcgggtttgagaagatcggcaaagttaaatgtgtatttcttaggacattcaagta |
314 |
Q |
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| T |
36892200 |
cagaaactgagaagtgcaccgaggaaaaactcagttcgacgaggatcaggtttgagaagatcagcaaagttgaatgaatatttctgaggacattcaagag |
36892299 |
T |
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| Q |
315 |
agttaagcatttccttgatcttgttataaagcttgatagcatgaatagatccaacgtgaagatcgggattctcgagatgctctagtgcatcgaaatcaag |
414 |
Q |
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| T |
36892300 |
cattaagcatttctatgatcttgttgtacagcttaataacaggaaccgctccaacgtgaagatcgggattctcaagatgctctagggcattgaactcaag |
36892399 |
T |
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| Q |
415 |
ctgtccgttgtcttcgctgtgagaaat |
441 |
Q |
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| T |
36892400 |
ctgttcgtcgtattccctgtgagaaat |
36892426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 199 - 414
Target Start/End: Original strand, 17480321 - 17480536
Alignment:
| Q |
199 |
aacgaacctgtcgagacagaaattgagaagagctccaaggaaaaactcggttcgatgaggatcgggtttgagaagatcggcaaagttaaatgtgtatttc |
298 |
Q |
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|||||||||||| |||||||||||||||||||| || || || |||||||| ||||||||||| || || | |||||| || |||||||| ||||||||| |
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| T |
17480321 |
aacgaacctgtccagacagaaattgagaagagcaccgagaaagaactcggtacgatgaggatcaggcttaacaagatcagccaagttaaacgtgtatttc |
17480420 |
T |
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| Q |
299 |
ttaggacattcaagtaagttaagcatttccttgatcttgttataaagcttgatagcatgaatagatccaacgtgaagatcgggattctcgagatgctcta |
398 |
Q |
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| T |
17480421 |
ttaggacattcaagagtattaagcatttccttgatcttattatacaccttgataacaggaaccgatccaacgtgaagatcaggattttcgagatgctcaa |
17480520 |
T |
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| Q |
399 |
gtgcatcgaaatcaag |
414 |
Q |
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| T |
17480521 |
ctgcattgaaatcaag |
17480536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 17479536 - 17479601
Alignment:
| Q |
17 |
aacctgtgcaatcttattatcttcaatatcaactatcttctgttccaacgcgttgaattcatctac |
82 |
Q |
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| T |
17479536 |
aacctgcgtaatcttattctccttaatctccactatcttctgttccaaggcgttgaattcatctac |
17479601 |
T |
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