View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21145_low_3 (Length: 483)
Name: NF21145_low_3
Description: NF21145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21145_low_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 16 - 483
Target Start/End: Original strand, 1250511 - 1250978
Alignment:
| Q |
16 |
cttctgcccgtggggaaaactcagcagcgtcgagaaacctcgctacccgaacaacctcaattcgacgctgcccaatcactcattgatgcttttaatatta |
115 |
Q |
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| T |
1250511 |
cttctgcccggggggaaaactcagcagcgtcgagaaacctcgctacccgaacaacctcaattcgacgctgcccaatcgctcattgatgcttttaatatta |
1250610 |
T |
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| Q |
116 |
aatatgaagtttgatgtgtttattatatgcaatgatacttaaattcacaattacttcaatatctatttatatatttgctcaaatgtataatagttgtggc |
215 |
Q |
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| T |
1250611 |
aatatgaagtttgatgtgtttattatatgcaatgatacttaaattcacaattatttcaatatctatttatatatttgctcaaatgtataatagttgtggc |
1250710 |
T |
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| Q |
216 |
taaaagtattttttgatgtagtgagtaaccctactaattaatattaaacaattaaaatgattgatagtacaaatgttatttatacaaaaggctatgaatc |
315 |
Q |
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| T |
1250711 |
taaaagtattttttgatgtagtgagtaaccctactaattaatattaaacaattaaaatgattgatagtacaaatgttatttatacaaaaggctatgaatc |
1250810 |
T |
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| Q |
316 |
ttcatccaccctgagatgatgattctaaattcgtgacacttcgtaccatatagcattcctcccctactaattgccaaaagagtgaaaaagaccaagaatt |
415 |
Q |
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| T |
1250811 |
ttcatccaccctgagatgatgattctaaattcgtgacactttgtaccatatagcattcctcccctactaattgccaaaagagtgaaaaagaccaagaatt |
1250910 |
T |
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| Q |
416 |
ggaacctaagcaattaaaagaaacagaaattgagttgattttcatgcaccattttctttggattctgc |
483 |
Q |
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| T |
1250911 |
ggaacctaagcaattaaaagaaacagaaattgagttgattttcatgcaccattttctttggattctgc |
1250978 |
T |
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