View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21145_low_9 (Length: 247)

Name: NF21145_low_9
Description: NF21145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21145_low_9
NF21145_low_9
[»] chr3 (6 HSPs)
chr3 (13-180)||(41358425-41358590)
chr3 (170-247)||(41358333-41358410)
chr3 (8-92)||(33178984-33179068)
chr3 (13-80)||(26370946-26371013)
chr3 (13-92)||(41218247-41218326)
chr3 (13-80)||(37516771-37516838)
[»] chr6 (5 HSPs)
chr6 (13-83)||(9696200-9696270)
chr6 (13-80)||(1780947-1781014)
chr6 (13-80)||(10397713-10397780)
chr6 (13-80)||(34248917-34248984)
chr6 (8-97)||(15122183-15122272)
[»] chr2 (6 HSPs)
chr2 (8-92)||(16220920-16221004)
chr2 (13-80)||(2475951-2476018)
chr2 (13-92)||(6799777-6799856)
chr2 (13-92)||(17249475-17249554)
chr2 (13-80)||(29257511-29257578)
chr2 (13-54)||(41010657-41010698)
[»] chr5 (9 HSPs)
chr5 (13-92)||(14832703-14832782)
chr5 (13-92)||(15675457-15675536)
chr5 (28-83)||(21069180-21069235)
chr5 (13-80)||(33007030-33007097)
chr5 (8-92)||(1672379-1672463)
chr5 (13-92)||(13942645-13942724)
chr5 (13-54)||(34846490-34846531)
chr5 (8-97)||(12267270-12267359)
chr5 (13-98)||(16567935-16568020)
[»] chr4 (7 HSPs)
chr4 (13-100)||(32006028-32006115)
chr4 (8-97)||(4728698-4728787)
chr4 (13-80)||(10058661-10058728)
chr4 (13-92)||(31364259-31364338)
chr4 (8-54)||(41972372-41972418)
chr4 (13-80)||(46645748-46645815)
chr4 (13-80)||(52373899-52373966)
[»] chr1 (6 HSPs)
chr1 (13-92)||(14727474-14727553)
chr1 (13-54)||(6802014-6802055)
chr1 (13-102)||(49898532-49898621)
chr1 (13-92)||(4774116-4774195)
chr1 (13-80)||(31844545-31844612)
chr1 (13-80)||(33468875-33468942)
[»] chr7 (8 HSPs)
chr7 (13-103)||(22206567-22206657)
chr7 (13-103)||(22228082-22228172)
chr7 (13-54)||(38128911-38128952)
chr7 (13-92)||(3012466-3012545)
chr7 (13-54)||(26722889-26722930)
chr7 (19-92)||(5991312-5991385)
chr7 (19-92)||(21932634-21932707)
chr7 (19-80)||(41759531-41759592)
[»] scaffold0618 (1 HSPs)
scaffold0618 (13-80)||(1840-1907)
[»] chr8 (2 HSPs)
chr8 (8-83)||(27321763-27321838)
chr8 (13-80)||(36406393-36406460)


Alignment Details
Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 41358590 - 41358425
Alignment:
Q  13 atgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatttctaactccgccgctgtttacaatggtattgt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||       | ||| |||||| |||||||||  |||||||| ||||||||||||||||||    
T  41358590 atgtgcaattatccgcaggaaggaaataacgttttgcgataatttttttgtcca-actcta-aaaatttcttgctccgccgttgtttacaatggtattgt 41358493  T
Q  113 tcataagtgtaataaaaaattggaagtgctcgtagttacaaacttttactcaagatatttatttttaa 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  41358492 tcataagtgtaataaaaaattggaagtgctcgtagttacaaactttcactcaagatatttatttttaa 41358425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 41358410 - 41358333
Alignment:
Q  170 tttatttttaattatcgttcatcattaaagttctcaaaataattttctcttaaatttcctgaaaacataagcaccatc 247  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41358410 tttatttttaattattgttcatcattaaagttctcaaaataattttctcttaaatttcctgaaaacataagcaccatc 41358333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 33179068 - 33178984
Alignment:
Q  8 agaatatgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatttctaactccgcc 92  Q
    |||| ||||| |||||| |||||||| ||| ||||||||||||||||       ||||||||||||||||||| || ||||||||    
T  33179068 agaaaatgtgaaattattcgcaggaatgaagtaacgttttgcgataaattttttgcccagactctataaaattcctgactccgcc 33178984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 26371013 - 26370946
Alignment:
Q  13 atgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatt 80  Q
    ||||| |||||| |||||||||||| ||||||||||||||||       |||||||||||||||||||    
T  26371013 atgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccagactctataaaatt 26370946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 41218326 - 41218247
Alignment:
Q  13 atgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatttctaactccgcc 92  Q
    ||||| |||||| |||||||||||| ||||||||||||||||       ||| ||||||||||||||| || ||||||||    
T  41218326 atgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcctagactctataaaattcctgactccgcc 41218247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 37516771 - 37516838
Alignment:
Q  13 atgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatt 80  Q
    ||||| |||||| |||||||||||| ||||||||||||||||       |||||| ||||||||||||    
T  37516771 atgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccaggctctataaaatt 37516838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 9696200 - 9696270
Alignment:
Q  13 atgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatttct 83  Q
    ||||| |||||| |||||||||||| ||||||||||||||||       ||||||||||||||||||||||    
T  9696200 atgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccagactctataaaatttct 9696270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 1781014 - 1780947
Alignment:
Q  13 atgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatt 80  Q
    ||||| |||||| |||||||||||| ||||||||||||||||       |||||||||||||||||||    
T  1781014 atgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttatgcccagactctataaaatt 1780947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 10397780 - 10397713
Alignment:
Q  13 atgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatt 80  Q
    ||||| |||||| |||||||||||| ||||||||||||||||       |||||||||||||||||||    
T  10397780 atgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccagactctataaaatt 10397713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 34248984 - 34248917
Alignment:
Q  13 atgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatt 80  Q
    ||||| ||||||||||||||||||| ||||||||||||||||       |||||| ||||||||||||    
T  34248984 atgtgaaattatccgcaggaaggaagtaacgttttgcgataaattttttgcccaggctctataaaatt 34248917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 15122183 - 15122272
Alignment:
Q  8 agaatatgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatttctaactccgccgctgt 97  Q
    |||| ||||| |||||| ||||| ||| || ||||||||||||||||       ||||| ||||||||||||| || |||||||| ||||    
T  15122183 agaaaatgtgaaattattcgcagaaagaaagtaacgttttgcgataaattttttgcccaaactctataaaattcctgactccgccactgt 15122272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 16221004 - 16220920
Alignment:
Q  8 agaatatgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatttctaactccgcc 92  Q
    |||| ||||||||||||  |||| |||||||||||||||||||||||       |||||| |||||||||||||||  |||||||    
T  16221004 agaaaatgtgcaattatatgcagaaaggaaataacgttttgcgataatttttttgcccaggctctataaaatttctggctccgcc 16220920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 2475951 - 2476018
Alignment:
Q  13 atgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatt 80  Q
    ||||| |||||| |||||||||||| ||||||||||||||||       |||||| ||||||||||||    
T  2475951 atgtgaaattattcgcaggaaggaagtaacgttttgcgataatttttttgcccaggctctataaaatt 2476018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 6799856 - 6799777
Alignment:
Q  13 atgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatttctaactccgcc 92  Q
    ||||| |||||| |||||||||||| |||||||||| |||||       |||||| |||||||||||| ||| |||||||    
T  6799856 atgtgaaattattcgcaggaaggaactaacgttttgtgataaaaaatttgcccaggctctataaaattcctagctccgcc 6799777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 17249475 - 17249554
Alignment:
Q  13 atgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatttctaactccgcc 92  Q
    ||||| |||||| ||||||||| || ||||||||||| ||||       ||||||||||||||||||| || ||||||||    
T  17249475 atgtgaaattattcgcaggaagaaagtaacgttttgctataaatattttgcccagactctataaaattcctgactccgcc 17249554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 29257511 - 29257578
Alignment:
Q  13 atgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatt 80  Q
    ||||| |||||| ||||| |||||| ||||||||||||||||       |||||||||||||||||||    
T  29257511 atgtgaaattattcgcagaaaggaagtaacgttttgcgataaattttttgcccagactctataaaatt 29257578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 41010657 - 41010698
Alignment:
Q  13 atgtgcaattatccgcaggaaggaaataacgttttgcgataa 54  Q
    ||||| |||||| |||||||||||| ||||||||||||||||    
T  41010657 atgtgaaattattcgcaggaaggaagtaacgttttgcgataa 41010698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 14832782 - 14832703
Alignment:
Q  13 atgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatttctaactccgcc 92  Q
    ||||| |||||| |||||||||||| ||| ||||||||||||       ||||||||||||||||||||||  |||||||    
T  14832782 atgtgaaattattcgcaggaaggaagtaatgttttgcgataaattttttgcccagactctataaaatttctggctccgcc 14832703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 15675457 - 15675536
Alignment:
Q  13 atgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatttctaactccgcc 92  Q
    ||||| |||||| |||||||||||| ||||||||||||||||       |||||| |||||||||||| ||| |||||||    
T  15675457 atgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccaggctctataaaattcctagctccgcc 15675536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 21069180 - 21069235
Alignment:
Q  28 caggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatttct 83  Q
    |||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  21069180 caggaaggaaataacgttttgcgataaattttttgcccagactctataaaatttct 21069235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 33007030 - 33007097
Alignment:
Q  13 atgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatt 80  Q
    ||||| |||||| |||||||||||| ||||||||||||||||       |||||||||||||||||||    
T  33007030 atgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccagactctataaaatt 33007097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 1672463 - 1672379
Alignment:
Q  8 agaatatgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatttctaactccgcc 92  Q
    |||| ||||| |||||| |||||||||||| |||| |||||||||||       |||||| |||||||||||||||  |||||||    
T  1672463 agaaaatgtgaaattattcgcaggaaggaagtaacattttgcgataatttttttgcccaggctctataaaatttctggctccgcc 1672379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 13942724 - 13942645
Alignment:
Q  13 atgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatttctaactccgcc 92  Q
    ||||| |||||| |||||||||||| ||||||||||||||||        ||||| |||||||||||||||  |||||||    
T  13942724 atgtgaaattattcgcaggaaggaagtaacgttttgcgataatttttttacccaggctctataaaatttctggctccgcc 13942645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 34846490 - 34846531
Alignment:
Q  13 atgtgcaattatccgcaggaaggaaataacgttttgcgataa 54  Q
    ||||| |||||| |||||||||||| ||||||||||||||||    
T  34846490 atgtgaaattattcgcaggaaggaagtaacgttttgcgataa 34846531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 12267359 - 12267270
Alignment:
Q  8 agaatatgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatttctaactccgccgctgt 97  Q
    |||| ||||| |||||| | |||||||||| ||||||||||||||||       |||||| ||||||||||| |||  ||||||| ||||    
T  12267359 agaaaatgtgaaattattcacaggaaggaagtaacgttttgcgataaactttttgcccaggctctataaaatgtctggctccgccactgt 12267270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 16567935 - 16568020
Alignment:
Q  13 atgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatttctaactccgccgctgtt 98  Q
    ||||| |||||| | |||||||||| |||| |||||||||||       |||||  ||||||||||||||| |||||||| |||||    
T  16567935 atgtgaaattattcccaggaaggaagtaacattttgcgataatttttttgcccaagctctataaaatttctgactccgccactgtt 16568020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 32006028 - 32006115
Alignment:
Q  13 atgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatttctaactccgccgctgttta 100  Q
    ||||| |||||| || ||||||||| ||||||||||||||||       |||||||||||||||||||  | |||||||| |||||||    
T  32006028 atgtgaaattattcgtaggaaggaagtaacgttttgcgataaattttttgcccagactctataaaattcatgactccgccactgttta 32006115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 4728698 - 4728787
Alignment:
Q  8 agaatatgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatttctaactccgccgctgt 97  Q
    |||| ||||| ||||||  ||||||||||| ||||||||||||||||       |||||| |||||||||||| ||| ||||||| ||||    
T  4728698 agaaaatgtgaaattatttgcaggaaggaagtaacgttttgcgataaattttttgcccaggctctataaaattcctagctccgccactgt 4728787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 10058661 - 10058728
Alignment:
Q  13 atgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatt 80  Q
    ||||| |||||| |||||||||||| ||||||||||||||||       |||||| ||||||||||||    
T  10058661 atgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccaggctctataaaatt 10058728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 31364259 - 31364338
Alignment:
Q  13 atgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatttctaactccgcc 92  Q
    ||||| |||||| |||||||||||| ||||||||||||||||       |||||  |||||||||||||||  |||||||    
T  31364259 atgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccatgctctataaaatttctggctccgcc 31364338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 41972418 - 41972372
Alignment:
Q  8 agaatatgtgcaattatccgcaggaaggaaataacgttttgcgataa 54  Q
    |||| ||||| |||||| |||||||||||| ||||||||||||||||    
T  41972418 agaaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataa 41972372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 46645748 - 46645815
Alignment:
Q  13 atgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatt 80  Q
    ||||| |||||| |||||||||||| ||||||||||||||||        ||||||||||||||||||    
T  46645748 atgtgaaattattcgcaggaaggaagtaacgttttgcgataaatttttttcccagactctataaaatt 46645815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 52373899 - 52373966
Alignment:
Q  13 atgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatt 80  Q
    ||||| |||||| |||||||||||| ||||||||||||||||       || ||||||||||||||||    
T  52373899 atgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcacagactctataaaatt 52373966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 14727474 - 14727553
Alignment:
Q  13 atgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatttctaactccgcc 92  Q
    ||||| |||||| |||||||||||| ||||||||||||||||       |||||| |||||||||||||||  |||||||    
T  14727474 atgtgaaattattcgcaggaaggaagtaacgttttgcgataatttttttgcccaggctctataaaatttctggctccgcc 14727553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 6802055 - 6802014
Alignment:
Q  13 atgtgcaattatccgcaggaaggaaataacgttttgcgataa 54  Q
    ||||||||||||||||| | ||||||||||||||||||||||    
T  6802055 atgtgcaattatccgcatgtaggaaataacgttttgcgataa 6802014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 49898532 - 49898621
Alignment:
Q  13 atgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatttctaactccgccgctgtttaca 102  Q
    ||||| |||||| |||||||||||  |||| |||||||||||       |||||||||||||| |||||||  ||||| |||||||||||    
T  49898532 atgtgaaattattcgcaggaaggacgtaacattttgcgataaattttttgcccagactctatataatttctggctccgtcgctgtttaca 49898621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 4774116 - 4774195
Alignment:
Q  13 atgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatttctaactccgcc 92  Q
    ||||| |||||| ||||||||| || |||| |||||||||||       ||||||||||||||||||||||  |||||||    
T  4774116 atgtgaaattattcgcaggaagaaagtaacattttgcgataatttttttgcccagactctataaaatttctggctccgcc 4774195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 31844612 - 31844545
Alignment:
Q  13 atgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatt 80  Q
    ||||| |||||| |||||||||||| |||| |||||||||||       |||||||||||||||||||    
T  31844612 atgtgaaattattcgcaggaaggaagtaacattttgcgataaattttttgcccagactctataaaatt 31844545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 33468942 - 33468875
Alignment:
Q  13 atgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatt 80  Q
    ||||| |||||| |||||||||||| ||||||||||||||||       |||||| ||||||||||||    
T  33468942 atgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccaggctctataaaatt 33468875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 22206657 - 22206567
Alignment:
Q  13 atgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatttctaactccgccgctgtttacaa 103  Q
    ||||| |||||| |||||||||||| |||| |||||||||||       |||||| |||||||||||||||  ||||||| ||| ||||||    
T  22206657 atgtgaaattattcgcaggaaggaagtaacattttgcgataattttcttgcccaggctctataaaatttcttgctccgccactgattacaa 22206567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 22228082 - 22228172
Alignment:
Q  13 atgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatttctaactccgccgctgtttacaa 103  Q
    ||||| |||||| |||||||||||| |||| |||||||||||       |||||| |||||||||||||||  ||||||| ||| ||||||    
T  22228082 atgtgaaattattcgcaggaaggaagtaacattttgcgataattttcttgcccaggctctataaaatttcttgctccgccactgattacaa 22228172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 38128952 - 38128911
Alignment:
Q  13 atgtgcaattatccgcaggaaggaaataacgttttgcgataa 54  Q
    ||||| ||||||| ||||||||||||||||||||||||||||    
T  38128952 atgtgaaattatctgcaggaaggaaataacgttttgcgataa 38128911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 3012466 - 3012545
Alignment:
Q  13 atgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatttctaactccgcc 92  Q
    ||||| |||||| | |||||||||| ||||||||||| ||||       ||||||||||||||||||||||  |||||||    
T  3012466 atgtgaaattattcacaggaaggaagtaacgttttgcaataatttttttgcccagactctataaaatttctggctccgcc 3012545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 26722930 - 26722889
Alignment:
Q  13 atgtgcaattatccgcaggaaggaaataacgttttgcgataa 54  Q
    ||||| |||||| |||||||||||| ||||||||||||||||    
T  26722930 atgtgaaattattcgcaggaaggaagtaacgttttgcgataa 26722889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 5991385 - 5991312
Alignment:
Q  19 aattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatttctaactccgcc 92  Q
    |||||| |||||||||||| |||| |||||||||||       |||||| ||||||||||||||  ||||||||    
T  5991385 aattattcgcaggaaggaagtaacattttgcgataatttttttgcccaggctctataaaatttccgactccgcc 5991312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 21932707 - 21932634
Alignment:
Q  19 aattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatttctaactccgcc 92  Q
    |||||| |||||||| ||| |||| |||||||||||       ||||||||||||||||||| || ||||||||    
T  21932707 aattattcgcaggaaagaagtaacattttgcgataaattttttgcccagactctataaaattcctgactccgcc 21932634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 41759592 - 41759531
Alignment:
Q  19 aattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatt 80  Q
    |||||| |||||||||||| ||||||| ||||||||       |||||||||||||||||||    
T  41759592 aattattcgcaggaaggaagtaacgttgtgcgataaattttttgcccagactctataaaatt 41759531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 1840 - 1907
Alignment:
Q  13 atgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatt 80  Q
    ||||| |||||| ||||| |||||| ||||||||||||||||       |||||||||||||||||||    
T  1840 atgtgaaattattcgcagaaaggaagtaacgttttgcgataaattttttgcccagactctataaaatt 1907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 27321838 - 27321763
Alignment:
Q  8 agaatatgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatttct 83  Q
    |||| ||||| |||||| |||||||||||| |||| |||||||||||       |||||| |||||||||||||||    
T  27321838 agaaaatgtgaaattattcgcaggaaggaagtaacattttgcgataatttttttgcccaggctctataaaatttct 27321763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 36406460 - 36406393
Alignment:
Q  13 atgtgcaattatccgcaggaaggaaataacgttttgcgataannnnnnngcccagactctataaaatt 80  Q
    ||||| |||||| |||||||||||| ||||||||||||||||       |||||| ||||||||||||    
T  36406460 atgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccaggctctataaaatt 36406393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University